Hb_116701_020

Information

Type -
Description -
Location Contig116701: 15961-16320
Sequence    

Annotation

kegg
ID rcu:RCOM_0482380
description hypothetical protein
nr
ID XP_002527348.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SMX9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0482380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 003_D04.ab1: 15708-16350 , 007_I03.ab1: 15794-16317 , 010_L21.ab1: 15709-16315 , 011_G24.ab1: 15709-16315 , 011_I12.ab1: 15873-16358 , 013_A18.ab1: 15805-16345 , 022_L07.ab1: 15900-16342 , 023_B01.ab1: 15782-16350 , 024_K09.ab1: 15794-16317 , 024_P02.ab1: 15783-16348 , 030_K10.ab1: 15709-16345 , 035_K13.ab1: 15775-16318 , 040_B20.ab1: 15709-16350 , 043_A13.ab1: 15709-16350 , 045_K24.ab1: 15750-16348 , 047_D06.ab1: 15709-16350 , 051_E08.ab1: 15750-16348

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116701_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000472_040 0.1171844979 - - PREDICTED: uncharacterized protein LOC105650670 [Jatropha curcas]
3 Hb_001386_130 0.1176741512 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
4 Hb_001780_060 0.1209633756 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
5 Hb_004813_010 0.1243427716 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000590_090 0.1252679727 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_005389_140 0.1309859307 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
8 Hb_002924_050 0.1330698302 - - PREDICTED: uncharacterized protein LOC105629366 [Jatropha curcas]
9 Hb_017434_090 0.1332536394 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000753_260 0.1335406703 transcription factor TF Family: MIKC MADS-box transcription factor 3 [Hevea brasiliensis]
11 Hb_009662_030 0.1367535575 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
12 Hb_000500_310 0.1405287789 - - -
13 Hb_001930_070 0.1407734583 - - -
14 Hb_000179_250 0.1426075347 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]
15 Hb_004738_090 0.1433960408 - - conserved hypothetical protein [Ricinus communis]
16 Hb_178968_150 0.1470267938 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000117_040 0.1486250224 - - 30S ribosomal protein S6A [Hevea brasiliensis]
18 Hb_001454_390 0.1491540007 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
19 Hb_002759_250 0.1496135556 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
20 Hb_001493_100 0.1503734055 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]

Gene co-expression network

sample Hb_116701_020 Hb_116701_020 Hb_000472_040 Hb_000472_040 Hb_116701_020--Hb_000472_040 Hb_001386_130 Hb_001386_130 Hb_116701_020--Hb_001386_130 Hb_001780_060 Hb_001780_060 Hb_116701_020--Hb_001780_060 Hb_004813_010 Hb_004813_010 Hb_116701_020--Hb_004813_010 Hb_000590_090 Hb_000590_090 Hb_116701_020--Hb_000590_090 Hb_005389_140 Hb_005389_140 Hb_116701_020--Hb_005389_140 Hb_001141_080 Hb_001141_080 Hb_000472_040--Hb_001141_080 Hb_000472_040--Hb_001386_130 Hb_000567_200 Hb_000567_200 Hb_000472_040--Hb_000567_200 Hb_002924_050 Hb_002924_050 Hb_000472_040--Hb_002924_050 Hb_003428_110 Hb_003428_110 Hb_000472_040--Hb_003428_110 Hb_000680_150 Hb_000680_150 Hb_001386_130--Hb_000680_150 Hb_001386_130--Hb_000590_090 Hb_001386_130--Hb_004813_010 Hb_001514_020 Hb_001514_020 Hb_001386_130--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_001386_130--Hb_001493_100 Hb_001454_390 Hb_001454_390 Hb_001780_060--Hb_001454_390 Hb_004738_090 Hb_004738_090 Hb_001780_060--Hb_004738_090 Hb_004545_150 Hb_004545_150 Hb_001780_060--Hb_004545_150 Hb_000500_310 Hb_000500_310 Hb_001780_060--Hb_000500_310 Hb_002875_090 Hb_002875_090 Hb_001780_060--Hb_002875_090 Hb_003906_120 Hb_003906_120 Hb_001780_060--Hb_003906_120 Hb_004813_010--Hb_001493_100 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_002044_090 Hb_002044_090 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_000062_230 Hb_000062_230 Hb_004813_010--Hb_000062_230 Hb_000590_090--Hb_005389_140 Hb_000590_090--Hb_000680_150 Hb_000714_020 Hb_000714_020 Hb_000590_090--Hb_000714_020 Hb_000590_090--Hb_001454_390 Hb_005714_040 Hb_005714_040 Hb_000590_090--Hb_005714_040 Hb_005389_140--Hb_005714_040 Hb_005389_140--Hb_000062_230 Hb_005389_140--Hb_004813_010 Hb_000183_070 Hb_000183_070 Hb_005389_140--Hb_000183_070 Hb_004374_010 Hb_004374_010 Hb_005389_140--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2989.26 229.845 108.83 48.0209 2219.36 1157.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2418.47 997.271 1172.85 333.059 277.158

CAGE analysis