Hb_116701_030

Information

Type -
Description -
Location Contig116701: 17759-19759
Sequence    

Annotation

kegg
ID tcc:TCM_034554
description Pentatricopeptide repeat (PPR-like) superfamily protein
nr
ID XP_007018302.1
description Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
swissprot
ID Q3EDF8
description Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
trembl
ID A0A061FFM0
description Pentatricopeptide repeat (PPR-like) superfamily protein OS=Theobroma cacao GN=TCM_034554 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116701_030 0.0 - - Pentatricopeptide repeat (PPR-like) superfamily protein [Theobroma cacao]
2 Hb_027969_010 0.1264086843 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
3 Hb_000029_220 0.1312165002 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
4 Hb_000914_010 0.1611458531 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
5 Hb_051410_010 0.1668447376 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
6 Hb_005676_020 0.1738341396 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
7 Hb_024248_010 0.1793733723 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
8 Hb_153625_010 0.1839477683 - - PREDICTED: 21 kDa protein [Populus euphratica]
9 Hb_002112_030 0.1839888166 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
10 Hb_008714_030 0.183990428 - - Multidrug resistance protein ABC transporter family protein, putative [Theobroma cacao]
11 Hb_030370_080 0.1840117634 - - hypothetical protein SELMODRAFT_100988 [Selaginella moellendorffii]
12 Hb_100648_020 0.1841213925 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
13 Hb_004093_070 0.1842230008 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
14 Hb_179061_010 0.1848454133 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
15 Hb_032050_030 0.1850030076 - - C, putative [Ricinus communis]
16 Hb_004274_010 0.1850545063 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
17 Hb_010721_040 0.185478139 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
18 Hb_000152_400 0.1862656706 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
19 Hb_000330_110 0.1864407308 - - -
20 Hb_020332_020 0.1866297689 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]

Gene co-expression network

sample Hb_116701_030 Hb_116701_030 Hb_027969_010 Hb_027969_010 Hb_116701_030--Hb_027969_010 Hb_000029_220 Hb_000029_220 Hb_116701_030--Hb_000029_220 Hb_000914_010 Hb_000914_010 Hb_116701_030--Hb_000914_010 Hb_051410_010 Hb_051410_010 Hb_116701_030--Hb_051410_010 Hb_005676_020 Hb_005676_020 Hb_116701_030--Hb_005676_020 Hb_024248_010 Hb_024248_010 Hb_116701_030--Hb_024248_010 Hb_027969_010--Hb_000029_220 Hb_027969_010--Hb_005676_020 Hb_027969_010--Hb_024248_010 Hb_004113_030 Hb_004113_030 Hb_027969_010--Hb_004113_030 Hb_001401_030 Hb_001401_030 Hb_027969_010--Hb_001401_030 Hb_000029_220--Hb_024248_010 Hb_000029_220--Hb_005676_020 Hb_001452_150 Hb_001452_150 Hb_000029_220--Hb_001452_150 Hb_009826_010 Hb_009826_010 Hb_000029_220--Hb_009826_010 Hb_004274_010 Hb_004274_010 Hb_000029_220--Hb_004274_010 Hb_000914_010--Hb_051410_010 Hb_000649_090 Hb_000649_090 Hb_000914_010--Hb_000649_090 Hb_011476_010 Hb_011476_010 Hb_000914_010--Hb_011476_010 Hb_000914_010--Hb_004274_010 Hb_010721_040 Hb_010721_040 Hb_000914_010--Hb_010721_040 Hb_000914_010--Hb_000029_220 Hb_051410_010--Hb_000649_090 Hb_051410_010--Hb_011476_010 Hb_051410_010--Hb_004274_010 Hb_014102_010 Hb_014102_010 Hb_051410_010--Hb_014102_010 Hb_000946_130 Hb_000946_130 Hb_051410_010--Hb_000946_130 Hb_005676_020--Hb_024248_010 Hb_005676_020--Hb_001401_030 Hb_000907_050 Hb_000907_050 Hb_005676_020--Hb_000907_050 Hb_062192_050 Hb_062192_050 Hb_005676_020--Hb_062192_050 Hb_024248_010--Hb_001401_030 Hb_024248_010--Hb_009826_010 Hb_003427_040 Hb_003427_040 Hb_024248_010--Hb_003427_040 Hb_024248_010--Hb_001452_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200346 0 0 0.229859 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0434036 0.667314

CAGE analysis