Hb_116783_010

Information

Type -
Description -
Location Contig116783: 15-290
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16190g
description POPTRDRAFT_772216; hypothetical protein
nr
ID XP_002317088.2
description hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
swissprot
ID A6P6V9
description Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1
trembl
ID B9I0Y4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s16190g PE=4 SV=2
Gene Ontology
ID GO:0008762
description tetrahydrocannabinolic acid synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116783_010 0.0 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
2 Hb_000925_120 0.0625992903 - - Spotted leaf protein, putative [Ricinus communis]
3 Hb_000147_010 0.1061201791 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
4 Hb_055154_010 0.1082189761 - - PREDICTED: laccase-7 [Jatropha curcas]
5 Hb_090510_010 0.1278905232 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
6 Hb_002809_020 0.1345751816 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
7 Hb_001242_020 0.1399174372 - - hypothetical protein JCGZ_08334 [Jatropha curcas]
8 Hb_001863_280 0.1403391262 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
9 Hb_000800_060 0.1432021468 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
10 Hb_005396_010 0.1475209195 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
11 Hb_000540_030 0.1509969285 - - Chitinase 1 precursor, putative [Ricinus communis]
12 Hb_003020_340 0.1565852207 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
13 Hb_098030_010 0.1580567456 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
14 Hb_012779_010 0.16088582 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
15 Hb_000002_150 0.1642259444 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001633_120 0.1712836176 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
17 Hb_124625_010 0.1725255543 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
18 Hb_012368_080 0.1750525705 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
19 Hb_002747_010 0.1813540759 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
20 Hb_152868_010 0.1847143891 rubber biosynthesis Gene Name: REF5 small rubber particle protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_116783_010 Hb_116783_010 Hb_000925_120 Hb_000925_120 Hb_116783_010--Hb_000925_120 Hb_000147_010 Hb_000147_010 Hb_116783_010--Hb_000147_010 Hb_055154_010 Hb_055154_010 Hb_116783_010--Hb_055154_010 Hb_090510_010 Hb_090510_010 Hb_116783_010--Hb_090510_010 Hb_002809_020 Hb_002809_020 Hb_116783_010--Hb_002809_020 Hb_001242_020 Hb_001242_020 Hb_116783_010--Hb_001242_020 Hb_000925_120--Hb_000147_010 Hb_000925_120--Hb_055154_010 Hb_003020_340 Hb_003020_340 Hb_000925_120--Hb_003020_340 Hb_000002_150 Hb_000002_150 Hb_000925_120--Hb_000002_150 Hb_000925_120--Hb_002809_020 Hb_160814_010 Hb_160814_010 Hb_000147_010--Hb_160814_010 Hb_000147_010--Hb_000002_150 Hb_000147_010--Hb_003020_340 Hb_000705_110 Hb_000705_110 Hb_000147_010--Hb_000705_110 Hb_055154_010--Hb_090510_010 Hb_000800_060 Hb_000800_060 Hb_055154_010--Hb_000800_060 Hb_069151_010 Hb_069151_010 Hb_055154_010--Hb_069151_010 Hb_055154_010--Hb_003020_340 Hb_090510_010--Hb_000800_060 Hb_005396_010 Hb_005396_010 Hb_090510_010--Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_090510_010--Hb_124625_010 Hb_090510_010--Hb_069151_010 Hb_000668_070 Hb_000668_070 Hb_090510_010--Hb_000668_070 Hb_007017_120 Hb_007017_120 Hb_002809_020--Hb_007017_120 Hb_178252_010 Hb_178252_010 Hb_002809_020--Hb_178252_010 Hb_098030_010 Hb_098030_010 Hb_002809_020--Hb_098030_010 Hb_002809_020--Hb_055154_010 Hb_003166_020 Hb_003166_020 Hb_002809_020--Hb_003166_020 Hb_008418_010 Hb_008418_010 Hb_002809_020--Hb_008418_010 Hb_014865_010 Hb_014865_010 Hb_001242_020--Hb_014865_010 Hb_002437_010 Hb_002437_010 Hb_001242_020--Hb_002437_010 Hb_000540_030 Hb_000540_030 Hb_001242_020--Hb_000540_030 Hb_001596_030 Hb_001596_030 Hb_001242_020--Hb_001596_030 Hb_001633_120 Hb_001633_120 Hb_001242_020--Hb_001633_120 Hb_009780_110 Hb_009780_110 Hb_001242_020--Hb_009780_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.53821 1.39962 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.92431 0

CAGE analysis