Hb_116894_020

Information

Type -
Description -
Location Contig116894: 2707-7756
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07660g
description POPTRDRAFT_564111; hypothetical protein
nr
ID XP_002312200.2
description hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
swissprot
ID O80813
description Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2
trembl
ID B9HHY4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07660g PE=4 SV=2
Gene Ontology
ID GO:0009507
description ycf20-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05246: 4178-6138 , PASA_asmbl_05247: 4086-5877 , PASA_asmbl_05248: 4178-5647 , PASA_asmbl_05250: 4608-6103 , PASA_asmbl_05251: 6813-7113
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116894_020 0.0 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
2 Hb_008554_070 0.0882230582 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
3 Hb_005092_060 0.104762852 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
4 Hb_001235_030 0.1050798214 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
5 Hb_002016_120 0.1067140713 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
6 Hb_006816_210 0.1087601141 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
7 Hb_024714_010 0.1108438392 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
8 Hb_000107_310 0.1160976296 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
9 Hb_002016_100 0.1184725056 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
10 Hb_001006_020 0.1185430406 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
11 Hb_001789_070 0.1213758292 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
12 Hb_015807_040 0.1222217451 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
13 Hb_001833_110 0.1233901981 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003732_010 0.123785153 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
15 Hb_000053_100 0.1239834639 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
16 Hb_001904_090 0.1248001662 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
17 Hb_020000_010 0.1252074088 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
18 Hb_138585_050 0.1257503076 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
19 Hb_001114_130 0.1277124892 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
20 Hb_117134_010 0.128174153 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_116894_020 Hb_116894_020 Hb_008554_070 Hb_008554_070 Hb_116894_020--Hb_008554_070 Hb_005092_060 Hb_005092_060 Hb_116894_020--Hb_005092_060 Hb_001235_030 Hb_001235_030 Hb_116894_020--Hb_001235_030 Hb_002016_120 Hb_002016_120 Hb_116894_020--Hb_002016_120 Hb_006816_210 Hb_006816_210 Hb_116894_020--Hb_006816_210 Hb_024714_010 Hb_024714_010 Hb_116894_020--Hb_024714_010 Hb_008554_070--Hb_024714_010 Hb_008554_070--Hb_002016_120 Hb_020000_010 Hb_020000_010 Hb_008554_070--Hb_020000_010 Hb_008554_070--Hb_001235_030 Hb_025240_040 Hb_025240_040 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100 Hb_001360_050 Hb_001360_050 Hb_005092_060--Hb_001360_050 Hb_005092_060--Hb_001235_030 Hb_002759_060 Hb_002759_060 Hb_005092_060--Hb_002759_060 Hb_000635_150 Hb_000635_150 Hb_005092_060--Hb_000635_150 Hb_004218_110 Hb_004218_110 Hb_005092_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_005092_060--Hb_001833_110 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_001235_030--Hb_002016_120 Hb_002016_120--Hb_024714_010 Hb_006541_010 Hb_006541_010 Hb_002016_120--Hb_006541_010 Hb_004800_120 Hb_004800_120 Hb_002016_120--Hb_004800_120 Hb_033153_060 Hb_033153_060 Hb_002016_120--Hb_033153_060 Hb_015807_040 Hb_015807_040 Hb_006816_210--Hb_015807_040 Hb_017413_010 Hb_017413_010 Hb_006816_210--Hb_017413_010 Hb_000331_450 Hb_000331_450 Hb_006816_210--Hb_000331_450 Hb_000086_550 Hb_000086_550 Hb_006816_210--Hb_000086_550 Hb_006846_060 Hb_006846_060 Hb_006816_210--Hb_006846_060 Hb_005357_130 Hb_005357_130 Hb_006816_210--Hb_005357_130 Hb_024714_010--Hb_020000_010 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_024714_010--Hb_025240_040 Hb_024185_020 Hb_024185_020 Hb_024714_010--Hb_024185_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63387 1.55562 3.41714 6.91353 5.15941 12.6962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.166 11.2896 11.8565 5.94398 9.98596

CAGE analysis