Hb_116898_010

Information

Type -
Description -
Location Contig116898: 1798-3377
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12030g
description POPTRDRAFT_249871; hypothetical protein
nr
ID XP_012079043.1
description PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
swissprot
ID P43935
description Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1
trembl
ID A0A067KIY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05252: 1996-3023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116898_010 0.0 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
2 Hb_000239_010 0.0680242636 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_155764_010 0.0745929355 - - -
4 Hb_027073_040 0.0873240848 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
5 Hb_002471_080 0.0906204416 - - oxidoreductase, putative [Ricinus communis]
6 Hb_003226_280 0.0916246944 - - PREDICTED: peter Pan-like protein [Populus euphratica]
7 Hb_012675_060 0.0917835368 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
8 Hb_000028_140 0.0920293658 - - surfeit locus protein, putative [Ricinus communis]
9 Hb_000046_290 0.0932530592 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
10 Hb_001141_280 0.093911659 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]
11 Hb_005883_100 0.0949182034 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
12 Hb_000363_200 0.0957678563 - - 40S ribosomal protein S8, putative [Ricinus communis]
13 Hb_000398_040 0.0977651258 - - Auxin response factor, putative [Ricinus communis]
14 Hb_003097_210 0.0977724543 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
15 Hb_012114_040 0.099806092 - - DNA binding protein, putative [Ricinus communis]
16 Hb_000329_310 0.1005388814 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
17 Hb_005731_170 0.1010814426 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
18 Hb_172932_010 0.1015345177 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001360_050 0.1015947492 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
20 Hb_029866_020 0.1017583416 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]

Gene co-expression network

sample Hb_116898_010 Hb_116898_010 Hb_000239_010 Hb_000239_010 Hb_116898_010--Hb_000239_010 Hb_155764_010 Hb_155764_010 Hb_116898_010--Hb_155764_010 Hb_027073_040 Hb_027073_040 Hb_116898_010--Hb_027073_040 Hb_002471_080 Hb_002471_080 Hb_116898_010--Hb_002471_080 Hb_003226_280 Hb_003226_280 Hb_116898_010--Hb_003226_280 Hb_012675_060 Hb_012675_060 Hb_116898_010--Hb_012675_060 Hb_000979_230 Hb_000979_230 Hb_000239_010--Hb_000979_230 Hb_009666_040 Hb_009666_040 Hb_000239_010--Hb_009666_040 Hb_000239_010--Hb_003226_280 Hb_001141_280 Hb_001141_280 Hb_000239_010--Hb_001141_280 Hb_000205_270 Hb_000205_270 Hb_000239_010--Hb_000205_270 Hb_003097_210 Hb_003097_210 Hb_155764_010--Hb_003097_210 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_000010_470 Hb_000010_470 Hb_155764_010--Hb_000010_470 Hb_002759_060 Hb_002759_060 Hb_027073_040--Hb_002759_060 Hb_000270_370 Hb_000270_370 Hb_027073_040--Hb_000270_370 Hb_033834_040 Hb_033834_040 Hb_027073_040--Hb_033834_040 Hb_000028_140 Hb_000028_140 Hb_027073_040--Hb_000028_140 Hb_000058_060 Hb_000058_060 Hb_027073_040--Hb_000058_060 Hb_000696_310 Hb_000696_310 Hb_027073_040--Hb_000696_310 Hb_000046_290 Hb_000046_290 Hb_002471_080--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_002471_080--Hb_001360_050 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_124755_010 Hb_124755_010 Hb_002471_080--Hb_124755_010 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_000024_030 Hb_000024_030 Hb_002471_080--Hb_000024_030 Hb_000363_200 Hb_000363_200 Hb_003226_280--Hb_000363_200 Hb_000865_070 Hb_000865_070 Hb_003226_280--Hb_000865_070 Hb_148200_010 Hb_148200_010 Hb_003226_280--Hb_148200_010 Hb_000030_100 Hb_000030_100 Hb_003226_280--Hb_000030_100 Hb_000089_160 Hb_000089_160 Hb_003226_280--Hb_000089_160 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_010080_090 Hb_010080_090 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.62648 2.1481 2.08095 2.39473 4.11868 7.40219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.24569 14.4379 14.1114 7.80541 3.19446

CAGE analysis