Hb_116929_010

Information

Type -
Description -
Location Contig116929: 9301-70084
Sequence    

Annotation

kegg
ID rcu:RCOM_1128370
description Nucleoprotein TPR, putative
nr
ID XP_012072861.1
description PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
swissprot
ID A4GSN8
description Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1
trembl
ID A0A067L032
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06909 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nuclear-pore anchor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05253: 9424-13242 , PASA_asmbl_05254: 13939-70084
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116929_010 0.0 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
2 Hb_002301_080 0.0615388015 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X2 [Jatropha curcas]
3 Hb_148909_030 0.0656802599 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
4 Hb_002400_240 0.0693043941 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
5 Hb_003044_020 0.076858333 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
6 Hb_000183_020 0.0770730578 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
7 Hb_003623_030 0.0772803251 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
8 Hb_000446_120 0.0775154653 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
9 Hb_003952_150 0.0777443404 - - PREDICTED: cactin [Jatropha curcas]
10 Hb_002551_070 0.078439128 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
11 Hb_117552_010 0.0791988082 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002471_210 0.0797436899 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
13 Hb_030627_060 0.0819089369 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_002107_070 0.0823165196 - - hypothetical protein RCOM_1598630 [Ricinus communis]
15 Hb_111985_080 0.0826821128 - - PREDICTED: pentatricopeptide repeat-containing protein At1g19720 [Jatropha curcas]
16 Hb_002974_060 0.0830334568 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
17 Hb_174821_010 0.0833341774 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
18 Hb_001322_210 0.0837700231 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
19 Hb_001493_040 0.0853226481 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
20 Hb_004718_010 0.0854526876 - - PREDICTED: uncharacterized protein LOC105638290 [Jatropha curcas]

Gene co-expression network

sample Hb_116929_010 Hb_116929_010 Hb_002301_080 Hb_002301_080 Hb_116929_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_116929_010--Hb_148909_030 Hb_002400_240 Hb_002400_240 Hb_116929_010--Hb_002400_240 Hb_003044_020 Hb_003044_020 Hb_116929_010--Hb_003044_020 Hb_000183_020 Hb_000183_020 Hb_116929_010--Hb_000183_020 Hb_003623_030 Hb_003623_030 Hb_116929_010--Hb_003623_030 Hb_002301_080--Hb_003044_020 Hb_117552_010 Hb_117552_010 Hb_002301_080--Hb_117552_010 Hb_133047_010 Hb_133047_010 Hb_002301_080--Hb_133047_010 Hb_002301_080--Hb_002400_240 Hb_000320_200 Hb_000320_200 Hb_002301_080--Hb_000320_200 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_111985_080 Hb_111985_080 Hb_148909_030--Hb_111985_080 Hb_148909_030--Hb_133047_010 Hb_002392_030 Hb_002392_030 Hb_148909_030--Hb_002392_030 Hb_000010_360 Hb_000010_360 Hb_148909_030--Hb_000010_360 Hb_001913_060 Hb_001913_060 Hb_002400_240--Hb_001913_060 Hb_030627_060 Hb_030627_060 Hb_002400_240--Hb_030627_060 Hb_002400_240--Hb_117552_010 Hb_005701_070 Hb_005701_070 Hb_002400_240--Hb_005701_070 Hb_000922_370 Hb_000922_370 Hb_003044_020--Hb_000922_370 Hb_003044_020--Hb_000183_020 Hb_006252_020 Hb_006252_020 Hb_003044_020--Hb_006252_020 Hb_003966_030 Hb_003966_030 Hb_003044_020--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_003044_020--Hb_003362_070 Hb_002329_040 Hb_002329_040 Hb_003044_020--Hb_002329_040 Hb_000183_020--Hb_002329_040 Hb_001195_320 Hb_001195_320 Hb_000183_020--Hb_001195_320 Hb_000183_020--Hb_003362_070 Hb_000166_130 Hb_000166_130 Hb_000183_020--Hb_000166_130 Hb_000183_020--Hb_000922_370 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_002028_170 Hb_002028_170 Hb_003623_030--Hb_002028_170 Hb_000107_040 Hb_000107_040 Hb_003623_030--Hb_000107_040 Hb_000158_100 Hb_000158_100 Hb_003623_030--Hb_000158_100 Hb_032631_040 Hb_032631_040 Hb_003623_030--Hb_032631_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.2046 34.3615 12.2016 16.6435 46.8431 55.2992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5893 14.1537 23.3686 37.812 29.3561

CAGE analysis