Hb_117092_010

Information

Type -
Description -
Location Contig117092: 972-2242
Sequence    

Annotation

kegg
ID rcu:RCOM_0554440
description acyl-CoA oxidase, putative (EC:1.9.3.1)
nr
ID XP_002525155.1
description acyl-CoA oxidase, putative [Ricinus communis]
swissprot
ID P0CZ24
description Putative acyl-coenzyme A oxidase At3g06690 OS=Arabidopsis thaliana GN=At3g06690 PE=3 SV=1
trembl
ID B9SGN6
description Acyl-coenzyme A oxidase OS=Ricinus communis GN=RCOM_0554440 PE=3 SV=1
Gene Ontology
ID GO:0016627
description acyl-coenzyme a oxidase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117092_010 0.0 - - acyl-CoA oxidase, putative [Ricinus communis]
2 Hb_000205_200 0.2034363719 - - -
3 Hb_000239_110 0.259146845 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
4 Hb_000025_440 0.2705181165 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
5 Hb_000175_140 0.2787364931 - - conserved hypothetical protein [Ricinus communis]
6 Hb_186158_010 0.2816232812 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002259_140 0.2818755381 - - -
8 Hb_004097_040 0.2850154357 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
9 Hb_000414_150 0.2852358619 - - mta/sah nucleosidase, putative [Ricinus communis]
10 Hb_006376_010 0.2916336102 - - PREDICTED: uncharacterized protein LOC104090718 [Nicotiana tomentosiformis]
11 Hb_005725_100 0.293693172 - - hypothetical protein 30 [Hevea brasiliensis]
12 Hb_000136_160 0.2937889785 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_182005_010 0.2952202355 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
14 Hb_004241_010 0.3021531517 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
15 Hb_005714_050 0.3023460873 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
16 Hb_092233_010 0.3031633596 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
17 Hb_001022_040 0.3049900526 - - PREDICTED: uncharacterized protein LOC105634753 [Jatropha curcas]
18 Hb_002903_010 0.3061547976 - - 60S ribosomal protein L37-3 [Morus notabilis]
19 Hb_156503_040 0.3064195735 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_001623_070 0.3073953542 - - cytochrome B5 isoform 1, putative [Ricinus communis]

Gene co-expression network

sample Hb_117092_010 Hb_117092_010 Hb_000205_200 Hb_000205_200 Hb_117092_010--Hb_000205_200 Hb_000239_110 Hb_000239_110 Hb_117092_010--Hb_000239_110 Hb_000025_440 Hb_000025_440 Hb_117092_010--Hb_000025_440 Hb_000175_140 Hb_000175_140 Hb_117092_010--Hb_000175_140 Hb_186158_010 Hb_186158_010 Hb_117092_010--Hb_186158_010 Hb_002259_140 Hb_002259_140 Hb_117092_010--Hb_002259_140 Hb_000136_160 Hb_000136_160 Hb_000205_200--Hb_000136_160 Hb_006376_010 Hb_006376_010 Hb_000205_200--Hb_006376_010 Hb_004097_040 Hb_004097_040 Hb_000205_200--Hb_004097_040 Hb_001979_030 Hb_001979_030 Hb_000205_200--Hb_001979_030 Hb_092233_010 Hb_092233_010 Hb_000205_200--Hb_092233_010 Hb_003398_020 Hb_003398_020 Hb_000239_110--Hb_003398_020 Hb_005725_100 Hb_005725_100 Hb_000239_110--Hb_005725_100 Hb_042871_010 Hb_042871_010 Hb_000239_110--Hb_042871_010 Hb_003376_380 Hb_003376_380 Hb_000239_110--Hb_003376_380 Hb_004429_110 Hb_004429_110 Hb_000239_110--Hb_004429_110 Hb_000500_210 Hb_000500_210 Hb_000239_110--Hb_000500_210 Hb_001017_080 Hb_001017_080 Hb_000025_440--Hb_001017_080 Hb_182005_010 Hb_182005_010 Hb_000025_440--Hb_182005_010 Hb_000025_440--Hb_000239_110 Hb_156503_040 Hb_156503_040 Hb_000025_440--Hb_156503_040 Hb_001022_040 Hb_001022_040 Hb_000025_440--Hb_001022_040 Hb_000025_440--Hb_000500_210 Hb_006570_050 Hb_006570_050 Hb_000175_140--Hb_006570_050 Hb_000175_140--Hb_092233_010 Hb_000896_110 Hb_000896_110 Hb_000175_140--Hb_000896_110 Hb_000483_090 Hb_000483_090 Hb_000175_140--Hb_000483_090 Hb_001164_030 Hb_001164_030 Hb_000175_140--Hb_001164_030 Hb_000975_270 Hb_000975_270 Hb_186158_010--Hb_000975_270 Hb_000046_200 Hb_000046_200 Hb_186158_010--Hb_000046_200 Hb_032974_010 Hb_032974_010 Hb_186158_010--Hb_032974_010 Hb_011224_040 Hb_011224_040 Hb_186158_010--Hb_011224_040 Hb_186158_010--Hb_182005_010 Hb_005199_010 Hb_005199_010 Hb_186158_010--Hb_005199_010 Hb_021906_010 Hb_021906_010 Hb_002259_140--Hb_021906_010 Hb_004200_030 Hb_004200_030 Hb_002259_140--Hb_004200_030 Hb_007386_010 Hb_007386_010 Hb_002259_140--Hb_007386_010 Hb_002259_140--Hb_004097_040 Hb_001911_070 Hb_001911_070 Hb_002259_140--Hb_001911_070 Hb_004241_010 Hb_004241_010 Hb_002259_140--Hb_004241_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0399824 0 0.499367 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.437526 1.54719 0 0.0353684 0

CAGE analysis