Hb_117134_010

Information

Type -
Description -
Location Contig117134: 5301-21390
Sequence    

Annotation

kegg
ID pop:POPTR_0015s15020g
description POPTRDRAFT_733945; zinc-binding family protein
nr
ID XP_012065952.1
description PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
swissprot
ID P42856
description 14 kDa zinc-binding protein OS=Zea mays GN=ZBP14 PE=1 SV=1
trembl
ID A0A067LF68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00088 PE=4 SV=1
Gene Ontology
ID GO:0003824
description 14 kda zinc-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05301: 5265-21401
cDNA
(Sanger)
(ID:Location)		 003_B07.ab1: 5284-21281 , 016_F07.ab1: 5284-21261

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117134_010 0.0 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
2 Hb_005398_030 0.0732228599 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
3 Hb_000496_060 0.0810663445 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
4 Hb_000061_320 0.0864608269 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
5 Hb_001833_110 0.0902711338 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005432_030 0.0914903552 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
7 Hb_071130_030 0.0922936726 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
8 Hb_046157_020 0.0932656839 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
9 Hb_003175_040 0.0958347432 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
10 Hb_008554_020 0.0970877332 - - -
11 Hb_000087_020 0.0971635312 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
12 Hb_009954_040 0.0988621617 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
13 Hb_012338_010 0.0989104509 - - conserved hypothetical protein [Ricinus communis]
14 Hb_148209_120 0.0998551029 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
15 Hb_000676_290 0.1003990934 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
16 Hb_092100_020 0.1012548271 - - strictosidine synthase, putative [Ricinus communis]
17 Hb_002016_100 0.1024705516 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
18 Hb_001832_010 0.1040608823 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
19 Hb_000300_610 0.1050257271 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
20 Hb_011310_190 0.1070440417 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_117134_010 Hb_117134_010 Hb_005398_030 Hb_005398_030 Hb_117134_010--Hb_005398_030 Hb_000496_060 Hb_000496_060 Hb_117134_010--Hb_000496_060 Hb_000061_320 Hb_000061_320 Hb_117134_010--Hb_000061_320 Hb_001833_110 Hb_001833_110 Hb_117134_010--Hb_001833_110 Hb_005432_030 Hb_005432_030 Hb_117134_010--Hb_005432_030 Hb_071130_030 Hb_071130_030 Hb_117134_010--Hb_071130_030 Hb_000087_020 Hb_000087_020 Hb_005398_030--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_005398_030--Hb_000024_080 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_001235_070 Hb_001235_070 Hb_005398_030--Hb_001235_070 Hb_000676_290 Hb_000676_290 Hb_005398_030--Hb_000676_290 Hb_000025_120 Hb_000025_120 Hb_000496_060--Hb_000025_120 Hb_000496_060--Hb_005432_030 Hb_003175_040 Hb_003175_040 Hb_000496_060--Hb_003175_040 Hb_014720_080 Hb_014720_080 Hb_000496_060--Hb_014720_080 Hb_000496_060--Hb_001833_110 Hb_012338_010 Hb_012338_010 Hb_000061_320--Hb_012338_010 Hb_009954_040 Hb_009954_040 Hb_000061_320--Hb_009954_040 Hb_000061_320--Hb_003175_040 Hb_000300_610 Hb_000300_610 Hb_000061_320--Hb_000300_610 Hb_003020_230 Hb_003020_230 Hb_000061_320--Hb_003020_230 Hb_026527_030 Hb_026527_030 Hb_000061_320--Hb_026527_030 Hb_002759_060 Hb_002759_060 Hb_001833_110--Hb_002759_060 Hb_001360_050 Hb_001360_050 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_004724_340 Hb_004724_340 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_000170_010 Hb_000170_010 Hb_005432_030--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_005432_030--Hb_002027_210 Hb_000625_070 Hb_000625_070 Hb_005432_030--Hb_000625_070 Hb_004108_230 Hb_004108_230 Hb_005432_030--Hb_004108_230 Hb_005432_030--Hb_003175_040 Hb_071130_030--Hb_000676_290 Hb_071130_030--Hb_005398_030 Hb_000963_190 Hb_000963_190 Hb_071130_030--Hb_000963_190 Hb_071130_030--Hb_001235_070 Hb_002685_190 Hb_002685_190 Hb_071130_030--Hb_002685_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.2287 16.3007 25.2089 34.3855 45.0362 97.1563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
159.188 85.9336 86.0055 35.0801 34.2865

CAGE analysis