Hb_117639_010

Information

Type -
Description -
Location Contig117639: 558-1681
Sequence    

Annotation

kegg
ID vvi:100261906
description 60S ribosomal protein L44
nr
ID KJB79863.1
description hypothetical protein B456_013G070100 [Gossypium raimondii]
swissprot
ID Q96499
description 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3
trembl
ID A0A0D2TWL3
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G070100 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117639_010 0.0 - - hypothetical protein B456_013G070100 [Gossypium raimondii]
2 Hb_000057_100 0.0845810012 - - Peroxidase 57 precursor, putative [Ricinus communis]
3 Hb_007875_020 0.1394692049 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
4 Hb_000337_030 0.1397240378 - - amino acid transporter, putative [Ricinus communis]
5 Hb_022250_160 0.1413240679 - - respiratory burst oxidase A [Manihot esculenta]
6 Hb_008143_040 0.1434078986 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
7 Hb_005663_090 0.1437915584 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
8 Hb_007017_100 0.1455765943 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
9 Hb_004667_030 0.1457323599 - - hypothetical protein VITISV_034568 [Vitis vinifera]
10 Hb_007416_290 0.1473518385 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
11 Hb_007134_030 0.1492885743 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
12 Hb_029510_090 0.1516034474 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
13 Hb_065521_010 0.1523192169 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
14 Hb_000181_220 0.1542030731 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
15 Hb_168319_060 0.1563507831 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
16 Hb_001675_040 0.1566489495 - - conserved hypothetical protein [Ricinus communis]
17 Hb_033772_060 0.1568870462 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001439_010 0.1571619338 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
19 Hb_007386_030 0.1573815292 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
20 Hb_001488_350 0.1584698516 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_117639_010 Hb_117639_010 Hb_000057_100 Hb_000057_100 Hb_117639_010--Hb_000057_100 Hb_007875_020 Hb_007875_020 Hb_117639_010--Hb_007875_020 Hb_000337_030 Hb_000337_030 Hb_117639_010--Hb_000337_030 Hb_022250_160 Hb_022250_160 Hb_117639_010--Hb_022250_160 Hb_008143_040 Hb_008143_040 Hb_117639_010--Hb_008143_040 Hb_005663_090 Hb_005663_090 Hb_117639_010--Hb_005663_090 Hb_000946_070 Hb_000946_070 Hb_000057_100--Hb_000946_070 Hb_001488_350 Hb_001488_350 Hb_000057_100--Hb_001488_350 Hb_000057_100--Hb_008143_040 Hb_000181_220 Hb_000181_220 Hb_000057_100--Hb_000181_220 Hb_143766_070 Hb_143766_070 Hb_000057_100--Hb_143766_070 Hb_065521_010 Hb_065521_010 Hb_007875_020--Hb_065521_010 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_007386_030 Hb_007386_030 Hb_007875_020--Hb_007386_030 Hb_029510_090 Hb_029510_090 Hb_007875_020--Hb_029510_090 Hb_168319_060 Hb_168319_060 Hb_007875_020--Hb_168319_060 Hb_002448_020 Hb_002448_020 Hb_007875_020--Hb_002448_020 Hb_019278_010 Hb_019278_010 Hb_000337_030--Hb_019278_010 Hb_000152_120 Hb_000152_120 Hb_000337_030--Hb_000152_120 Hb_000337_030--Hb_005663_090 Hb_001244_070 Hb_001244_070 Hb_000337_030--Hb_001244_070 Hb_000337_030--Hb_000181_220 Hb_170023_010 Hb_170023_010 Hb_000337_030--Hb_170023_010 Hb_004079_100 Hb_004079_100 Hb_022250_160--Hb_004079_100 Hb_007416_290 Hb_007416_290 Hb_022250_160--Hb_007416_290 Hb_001040_200 Hb_001040_200 Hb_022250_160--Hb_001040_200 Hb_022250_160--Hb_007386_030 Hb_008566_080 Hb_008566_080 Hb_022250_160--Hb_008566_080 Hb_000594_160 Hb_000594_160 Hb_022250_160--Hb_000594_160 Hb_008143_040--Hb_007416_290 Hb_009545_030 Hb_009545_030 Hb_008143_040--Hb_009545_030 Hb_007134_030 Hb_007134_030 Hb_008143_040--Hb_007134_030 Hb_000115_250 Hb_000115_250 Hb_008143_040--Hb_000115_250 Hb_001439_010 Hb_001439_010 Hb_005663_090--Hb_001439_010 Hb_000680_070 Hb_000680_070 Hb_005663_090--Hb_000680_070 Hb_006469_090 Hb_006469_090 Hb_005663_090--Hb_006469_090 Hb_005168_020 Hb_005168_020 Hb_005663_090--Hb_005168_020 Hb_005731_070 Hb_005731_070 Hb_005663_090--Hb_005731_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.172788 0.839765 1.44428 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.151431 0 1.35814 1.07078

CAGE analysis