Hb_117807_010

Information

Type -
Description -
Location Contig117807: 34674-39686
Sequence    

Annotation

kegg
ID cit:102630506
description uncharacterized LOC102630506
nr
ID XP_012074196.1
description PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
swissprot
ID Q08D75
description Bromodomain-containing protein 4A OS=Xenopus laevis GN=brd4-a PE=2 SV=1
trembl
ID A0A067KVI4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05384: 13695-34796 , PASA_asmbl_05385: 34950-37610 , PASA_asmbl_05386: 34950-37602 , PASA_asmbl_05387: 36452-36939 , PASA_asmbl_05388: 37623-39622
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117807_010 0.0 - - PREDICTED: uncharacterized protein LOC105635720 [Jatropha curcas]
2 Hb_000170_120 0.1433163811 - - ATP binding protein, putative [Ricinus communis]
3 Hb_012163_020 0.1443081867 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
4 Hb_000140_360 0.1492795961 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
5 Hb_000815_290 0.1541733105 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
6 Hb_000340_310 0.1567551704 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
7 Hb_002026_120 0.1635427891 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
8 Hb_001102_210 0.1642123163 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
9 Hb_000059_010 0.166365576 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_023344_050 0.1702919816 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
11 Hb_002078_440 0.1738993231 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
12 Hb_000130_110 0.1801134756 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
13 Hb_083380_010 0.1824289334 - - -
14 Hb_005496_090 0.1876055113 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
15 Hb_000008_400 0.1882182295 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
16 Hb_000538_180 0.1883402037 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
17 Hb_000771_060 0.1920115896 - - PREDICTED: spermine synthase [Jatropha curcas]
18 Hb_000111_450 0.1930830273 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
19 Hb_003097_060 0.1939128488 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
20 Hb_130719_010 0.1947959571 - - V-type proton ATPase subunit E [Hevea brasiliensis]

Gene co-expression network

sample Hb_117807_010 Hb_117807_010 Hb_000170_120 Hb_000170_120 Hb_117807_010--Hb_000170_120 Hb_012163_020 Hb_012163_020 Hb_117807_010--Hb_012163_020 Hb_000140_360 Hb_000140_360 Hb_117807_010--Hb_000140_360 Hb_000815_290 Hb_000815_290 Hb_117807_010--Hb_000815_290 Hb_000340_310 Hb_000340_310 Hb_117807_010--Hb_000340_310 Hb_002026_120 Hb_002026_120 Hb_117807_010--Hb_002026_120 Hb_000170_120--Hb_012163_020 Hb_003097_060 Hb_003097_060 Hb_000170_120--Hb_003097_060 Hb_002609_040 Hb_002609_040 Hb_000170_120--Hb_002609_040 Hb_005656_190 Hb_005656_190 Hb_000170_120--Hb_005656_190 Hb_000389_050 Hb_000389_050 Hb_000170_120--Hb_000389_050 Hb_012163_020--Hb_003097_060 Hb_001377_420 Hb_001377_420 Hb_012163_020--Hb_001377_420 Hb_007943_190 Hb_007943_190 Hb_012163_020--Hb_007943_190 Hb_012163_020--Hb_000340_310 Hb_001102_210 Hb_001102_210 Hb_000140_360--Hb_001102_210 Hb_002078_440 Hb_002078_440 Hb_000140_360--Hb_002078_440 Hb_000997_190 Hb_000997_190 Hb_000140_360--Hb_000997_190 Hb_000140_360--Hb_002026_120 Hb_000140_360--Hb_000815_290 Hb_000771_060 Hb_000771_060 Hb_000815_290--Hb_000771_060 Hb_000059_010 Hb_000059_010 Hb_000815_290--Hb_000059_010 Hb_005054_260 Hb_005054_260 Hb_000815_290--Hb_005054_260 Hb_005496_090 Hb_005496_090 Hb_000815_290--Hb_005496_090 Hb_004089_020 Hb_004089_020 Hb_000815_290--Hb_004089_020 Hb_130719_010 Hb_130719_010 Hb_000815_290--Hb_130719_010 Hb_000111_450 Hb_000111_450 Hb_000340_310--Hb_000111_450 Hb_003994_190 Hb_003994_190 Hb_000340_310--Hb_003994_190 Hb_001096_110 Hb_001096_110 Hb_000340_310--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_000340_310--Hb_000130_110 Hb_013405_140 Hb_013405_140 Hb_000340_310--Hb_013405_140 Hb_000340_310--Hb_002026_120 Hb_000928_130 Hb_000928_130 Hb_002026_120--Hb_000928_130 Hb_000096_150 Hb_000096_150 Hb_002026_120--Hb_000096_150 Hb_023344_050 Hb_023344_050 Hb_002026_120--Hb_023344_050 Hb_000530_070 Hb_000530_070 Hb_002026_120--Hb_000530_070 Hb_000318_160 Hb_000318_160 Hb_002026_120--Hb_000318_160 Hb_001314_040 Hb_001314_040 Hb_002026_120--Hb_001314_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.868865 1.57109 6.94141 8.15393 0.201969 0.580537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12858 18.2005 23.2934 4.72373 5.68434

CAGE analysis