Hb_117807_020

Information

Type -
Description -
Location Contig117807: 40010-41205
Sequence    

Annotation

kegg
ID rcu:RCOM_0532510
description methyltransferase, putative
nr
ID XP_002526969.1
description methyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLV0
description Methyltransferase, putative OS=Ricinus communis GN=RCOM_0532510 PE=4 SV=1
Gene Ontology
ID GO:0008168
description methyltransferase type 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05389: 40177-40920
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117807_020 0.0 - - methyltransferase, putative [Ricinus communis]
2 Hb_000083_180 0.0616050729 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
3 Hb_005276_080 0.0624858822 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa a, chloroplastic [Jatropha curcas]
4 Hb_001766_160 0.0629151421 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
5 Hb_000450_050 0.0652415025 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
6 Hb_000589_340 0.0654943883 - - unknown [Populus trichocarpa x Populus deltoides]
7 Hb_000230_420 0.0664832044 - - GS [Hevea brasiliensis subsp. brasiliensis]
8 Hb_000531_100 0.067870906 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
9 Hb_001416_130 0.0685470464 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000139_310 0.0729744549 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
11 Hb_001292_030 0.0756980052 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
12 Hb_001006_160 0.0778014692 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
13 Hb_006570_030 0.078294623 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
14 Hb_001277_430 0.0793513859 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
15 Hb_001322_120 0.0794730018 - - nutrient reservoir, putative [Ricinus communis]
16 Hb_005649_060 0.0804183815 - - PREDICTED: uncharacterized protein LOC105644161 [Jatropha curcas]
17 Hb_007044_270 0.0804969434 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
18 Hb_013726_060 0.0830613953 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
19 Hb_002871_180 0.083990109 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
20 Hb_001958_060 0.0854903268 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_117807_020 Hb_117807_020 Hb_000083_180 Hb_000083_180 Hb_117807_020--Hb_000083_180 Hb_005276_080 Hb_005276_080 Hb_117807_020--Hb_005276_080 Hb_001766_160 Hb_001766_160 Hb_117807_020--Hb_001766_160 Hb_000450_050 Hb_000450_050 Hb_117807_020--Hb_000450_050 Hb_000589_340 Hb_000589_340 Hb_117807_020--Hb_000589_340 Hb_000230_420 Hb_000230_420 Hb_117807_020--Hb_000230_420 Hb_000083_180--Hb_000230_420 Hb_003020_120 Hb_003020_120 Hb_000083_180--Hb_003020_120 Hb_001006_160 Hb_001006_160 Hb_000083_180--Hb_001006_160 Hb_000676_320 Hb_000676_320 Hb_000083_180--Hb_000676_320 Hb_000083_180--Hb_005276_080 Hb_005276_080--Hb_001006_160 Hb_006665_020 Hb_006665_020 Hb_005276_080--Hb_006665_020 Hb_000531_100 Hb_000531_100 Hb_005276_080--Hb_000531_100 Hb_005276_080--Hb_000450_050 Hb_005276_080--Hb_000589_340 Hb_005276_080--Hb_000676_320 Hb_001322_120 Hb_001322_120 Hb_001766_160--Hb_001322_120 Hb_005649_060 Hb_005649_060 Hb_001766_160--Hb_005649_060 Hb_007477_060 Hb_007477_060 Hb_001766_160--Hb_007477_060 Hb_001766_160--Hb_000531_100 Hb_002871_180 Hb_002871_180 Hb_001766_160--Hb_002871_180 Hb_001006_150 Hb_001006_150 Hb_001766_160--Hb_001006_150 Hb_000450_050--Hb_000589_340 Hb_001621_090 Hb_001621_090 Hb_000450_050--Hb_001621_090 Hb_005000_120 Hb_005000_120 Hb_000450_050--Hb_005000_120 Hb_000450_050--Hb_006665_020 Hb_008748_050 Hb_008748_050 Hb_000450_050--Hb_008748_050 Hb_000139_310 Hb_000139_310 Hb_000589_340--Hb_000139_310 Hb_001416_130 Hb_001416_130 Hb_000589_340--Hb_001416_130 Hb_006570_030 Hb_006570_030 Hb_000589_340--Hb_006570_030 Hb_002785_040 Hb_002785_040 Hb_000589_340--Hb_002785_040 Hb_001292_030 Hb_001292_030 Hb_000230_420--Hb_001292_030 Hb_000230_420--Hb_000531_100 Hb_002534_020 Hb_002534_020 Hb_000230_420--Hb_002534_020 Hb_001277_350 Hb_001277_350 Hb_000230_420--Hb_001277_350 Hb_003038_060 Hb_003038_060 Hb_000230_420--Hb_003038_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0475649 1.61881 26.1197 6.63488 0.0573361 0.217898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.217839 0.0342696 0 0.219901 43.2555

CAGE analysis