Hb_117840_010

Information

Type -
Description -
Location Contig117840: 35-1069
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_002522629.1
description Disease resistance protein RPS5, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117840_010 0.0 - - Disease resistance protein RPS5, putative [Ricinus communis]
2 Hb_002218_070 0.1185613295 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
3 Hb_010261_030 0.1274140754 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_002600_010 0.1511388477 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
5 Hb_062479_010 0.1574588754 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
6 Hb_062229_010 0.158621947 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_001879_050 0.1617475398 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_043939_010 0.1619469384 - - hypothetical protein B456_N011100 [Gossypium raimondii]
9 Hb_027556_040 0.162223396 - - PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera]
10 Hb_000450_180 0.1648827841 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_057079_020 0.1665614876 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001408_150 0.1709685789 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
13 Hb_000236_110 0.1721965956 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
14 Hb_000603_120 0.1724530195 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
15 Hb_002571_010 0.1732597964 - - cationic amino acid transporter, putative [Ricinus communis]
16 Hb_002329_030 0.17484919 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
17 Hb_001921_010 0.1760593311 - - ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_000233_100 0.1765917653 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
19 Hb_060909_010 0.1775223817 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
20 Hb_001410_010 0.1777859908 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]

Gene co-expression network

sample Hb_117840_010 Hb_117840_010 Hb_002218_070 Hb_002218_070 Hb_117840_010--Hb_002218_070 Hb_010261_030 Hb_010261_030 Hb_117840_010--Hb_010261_030 Hb_002600_010 Hb_002600_010 Hb_117840_010--Hb_002600_010 Hb_062479_010 Hb_062479_010 Hb_117840_010--Hb_062479_010 Hb_062229_010 Hb_062229_010 Hb_117840_010--Hb_062229_010 Hb_001879_050 Hb_001879_050 Hb_117840_010--Hb_001879_050 Hb_001410_010 Hb_001410_010 Hb_002218_070--Hb_001410_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030 Hb_002609_130 Hb_002609_130 Hb_010261_030--Hb_002609_130 Hb_010261_030--Hb_062229_010 Hb_005155_010 Hb_005155_010 Hb_010261_030--Hb_005155_010 Hb_010261_030--Hb_002218_070 Hb_001971_020 Hb_001971_020 Hb_010261_030--Hb_001971_020 Hb_000280_110 Hb_000280_110 Hb_002600_010--Hb_000280_110 Hb_004306_140 Hb_004306_140 Hb_002600_010--Hb_004306_140 Hb_002276_100 Hb_002276_100 Hb_002600_010--Hb_002276_100 Hb_009803_030 Hb_009803_030 Hb_002600_010--Hb_009803_030 Hb_007894_030 Hb_007894_030 Hb_002600_010--Hb_007894_030 Hb_000563_120 Hb_000563_120 Hb_002600_010--Hb_000563_120 Hb_001401_070 Hb_001401_070 Hb_062479_010--Hb_001401_070 Hb_064047_010 Hb_064047_010 Hb_062479_010--Hb_064047_010 Hb_003371_260 Hb_003371_260 Hb_062479_010--Hb_003371_260 Hb_002571_010 Hb_002571_010 Hb_062479_010--Hb_002571_010 Hb_010381_110 Hb_010381_110 Hb_062479_010--Hb_010381_110 Hb_062479_010--Hb_001879_050 Hb_001391_100 Hb_001391_100 Hb_062229_010--Hb_001391_100 Hb_061908_020 Hb_061908_020 Hb_062229_010--Hb_061908_020 Hb_004605_020 Hb_004605_020 Hb_062229_010--Hb_004605_020 Hb_043939_010 Hb_043939_010 Hb_062229_010--Hb_043939_010 Hb_000197_230 Hb_000197_230 Hb_062229_010--Hb_000197_230 Hb_000172_010 Hb_000172_010 Hb_001879_050--Hb_000172_010 Hb_000984_100 Hb_000984_100 Hb_001879_050--Hb_000984_100 Hb_002609_150 Hb_002609_150 Hb_001879_050--Hb_002609_150 Hb_001879_050--Hb_002571_010 Hb_001148_040 Hb_001148_040 Hb_001879_050--Hb_001148_040 Hb_000579_220 Hb_000579_220 Hb_001879_050--Hb_000579_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.31974 0.537585 2.58085 0.371849 0.413435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0537559 0 0.155134 3.31922 2.41321

CAGE analysis