Hb_117950_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig117950: 8251-30104
Sequence    

Annotation

kegg
ID rcu:RCOM_0275830
description Mitogen-activated protein kinase kinase kinase, putative (EC:2.7.11.25)
nr
ID XP_012065654.1
description PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
swissprot
ID Q39008
description Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2
trembl
ID A0A067L8R2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16910 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05411: 8588-8722 , PASA_asmbl_05412: 8725-9575 , PASA_asmbl_05414: 10211-21044 , PASA_asmbl_05415: 13219-19017 , PASA_asmbl_05416: 11495-13206 , PASA_asmbl_05417: 24542-30065
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117950_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
2 Hb_153547_010 0.0658774727 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
3 Hb_000078_100 0.0710464715 - - PREDICTED: topless-related protein 4-like isoform X2 [Jatropha curcas]
4 Hb_002725_070 0.0730429741 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
5 Hb_000317_440 0.0770794674 - - PREDICTED: zinc finger CCCH domain-containing protein 13 isoform X2 [Jatropha curcas]
6 Hb_000631_150 0.0794365749 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
7 Hb_001431_070 0.0804083982 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
8 Hb_005295_040 0.0822768728 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
9 Hb_000331_480 0.0891063473 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
10 Hb_002675_190 0.0906740937 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_002820_040 0.0924258714 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004608_020 0.0927015949 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
13 Hb_001486_120 0.093719425 - - PREDICTED: importin-5-like [Jatropha curcas]
14 Hb_016657_020 0.094431971 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
15 Hb_000212_280 0.096162603 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
16 Hb_000413_130 0.0981603062 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
17 Hb_000318_140 0.0984453381 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
18 Hb_000136_150 0.0985061263 - - hypothetical protein VITISV_038366 [Vitis vinifera]
19 Hb_004931_040 0.0986959703 - - splicing factor-related family protein [Populus trichocarpa]
20 Hb_002169_010 0.0992257015 - - PREDICTED: la-related protein 6B [Jatropha curcas]

Gene co-expression network

sample Hb_117950_020 Hb_117950_020 Hb_153547_010 Hb_153547_010 Hb_117950_020--Hb_153547_010 Hb_000078_100 Hb_000078_100 Hb_117950_020--Hb_000078_100 Hb_002725_070 Hb_002725_070 Hb_117950_020--Hb_002725_070 Hb_000317_440 Hb_000317_440 Hb_117950_020--Hb_000317_440 Hb_000631_150 Hb_000631_150 Hb_117950_020--Hb_000631_150 Hb_001431_070 Hb_001431_070 Hb_117950_020--Hb_001431_070 Hb_153547_010--Hb_000317_440 Hb_153547_010--Hb_000631_150 Hb_004724_360 Hb_004724_360 Hb_153547_010--Hb_004724_360 Hb_005295_040 Hb_005295_040 Hb_153547_010--Hb_005295_040 Hb_000318_140 Hb_000318_140 Hb_153547_010--Hb_000318_140 Hb_000078_100--Hb_002725_070 Hb_002820_040 Hb_002820_040 Hb_000078_100--Hb_002820_040 Hb_004608_020 Hb_004608_020 Hb_000078_100--Hb_004608_020 Hb_000078_100--Hb_000631_150 Hb_005635_010 Hb_005635_010 Hb_000078_100--Hb_005635_010 Hb_002725_070--Hb_005295_040 Hb_042083_070 Hb_042083_070 Hb_002725_070--Hb_042083_070 Hb_000814_090 Hb_000814_090 Hb_002725_070--Hb_000814_090 Hb_002725_070--Hb_002820_040 Hb_000317_440--Hb_000631_150 Hb_001437_100 Hb_001437_100 Hb_000317_440--Hb_001437_100 Hb_000136_150 Hb_000136_150 Hb_000317_440--Hb_000136_150 Hb_002883_010 Hb_002883_010 Hb_000317_440--Hb_002883_010 Hb_016657_020 Hb_016657_020 Hb_000317_440--Hb_016657_020 Hb_000134_360 Hb_000134_360 Hb_000631_150--Hb_000134_360 Hb_000849_100 Hb_000849_100 Hb_000631_150--Hb_000849_100 Hb_000631_150--Hb_004608_020 Hb_000631_150--Hb_000318_140 Hb_031754_010 Hb_031754_010 Hb_000631_150--Hb_031754_010 Hb_000413_130 Hb_000413_130 Hb_001431_070--Hb_000413_130 Hb_001431_070--Hb_002725_070 Hb_001431_070--Hb_005295_040 Hb_001439_180 Hb_001439_180 Hb_001431_070--Hb_001439_180 Hb_000367_290 Hb_000367_290 Hb_001431_070--Hb_000367_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.0183 31.5715 5.24946 6.48281 94.6615 98.6004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.4951 19.1762 31.6844 36.7305 11.0943

CAGE analysis