Hb_118026_010

Information

Type transcription factor
Description TF Family: GNAT
Location Contig118026: 95-2657
Sequence    

Annotation

kegg
ID rcu:RCOM_0962820
description acetyltransferase complex ard1 subunit, putative (EC:2.3.1.88)
nr
ID XP_012065622.1
description PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
swissprot
ID Q3UX61
description N-alpha-acetyltransferase 11 OS=Mus musculus GN=Naa11 PE=2 SV=1
trembl
ID B9RVI5
description Acetyltransferase complex ard1 subunit, putative OS=Ricinus communis GN=RCOM_0962820 PE=4 SV=1
Gene Ontology
ID GO:0004596
description n-alpha-acetyltransferase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05425: 148-1253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118026_010 0.0 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
2 Hb_000282_030 0.0829768163 - - K(+) efflux antiporter 4 [Glycine soja]
3 Hb_001205_200 0.1008102955 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000357_110 0.1018451448 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
5 Hb_006916_040 0.1039404916 - - 60S ribosomal protein L7a, putative [Ricinus communis]
6 Hb_000076_160 0.1094062837 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
7 Hb_002078_220 0.1094332981 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
8 Hb_167234_010 0.1114629153 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
9 Hb_005048_130 0.1131369298 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
10 Hb_002272_020 0.1144178874 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
11 Hb_000081_010 0.1157426508 - - hypothetical protein B456_012G056000 [Gossypium raimondii]
12 Hb_000256_190 0.1159943768 - - PREDICTED: pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Jatropha curcas]
13 Hb_010997_080 0.1172936899 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
14 Hb_000649_110 0.1177879519 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
15 Hb_005355_030 0.1193352486 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
16 Hb_003299_030 0.1215192738 - - PREDICTED: uncharacterized protein At1g27050 isoform X1 [Jatropha curcas]
17 Hb_028962_020 0.1222552393 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
18 Hb_002056_090 0.122919252 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
19 Hb_001864_060 0.1230287188 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
20 Hb_106552_020 0.1230317489 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_118026_010 Hb_118026_010 Hb_000282_030 Hb_000282_030 Hb_118026_010--Hb_000282_030 Hb_001205_200 Hb_001205_200 Hb_118026_010--Hb_001205_200 Hb_000357_110 Hb_000357_110 Hb_118026_010--Hb_000357_110 Hb_006916_040 Hb_006916_040 Hb_118026_010--Hb_006916_040 Hb_000076_160 Hb_000076_160 Hb_118026_010--Hb_000076_160 Hb_002078_220 Hb_002078_220 Hb_118026_010--Hb_002078_220 Hb_005355_030 Hb_005355_030 Hb_000282_030--Hb_005355_030 Hb_000282_030--Hb_006916_040 Hb_000282_030--Hb_000076_160 Hb_000282_030--Hb_001205_200 Hb_002272_020 Hb_002272_020 Hb_000282_030--Hb_002272_020 Hb_000087_060 Hb_000087_060 Hb_001205_200--Hb_000087_060 Hb_004143_100 Hb_004143_100 Hb_001205_200--Hb_004143_100 Hb_001205_200--Hb_000076_160 Hb_000402_230 Hb_000402_230 Hb_001205_200--Hb_000402_230 Hb_000358_230 Hb_000358_230 Hb_001205_200--Hb_000358_230 Hb_003866_080 Hb_003866_080 Hb_001205_200--Hb_003866_080 Hb_002205_110 Hb_002205_110 Hb_000357_110--Hb_002205_110 Hb_005306_190 Hb_005306_190 Hb_000357_110--Hb_005306_190 Hb_003389_040 Hb_003389_040 Hb_000357_110--Hb_003389_040 Hb_006816_350 Hb_006816_350 Hb_000357_110--Hb_006816_350 Hb_010997_080 Hb_010997_080 Hb_000357_110--Hb_010997_080 Hb_004586_140 Hb_004586_140 Hb_000357_110--Hb_004586_140 Hb_004631_180 Hb_004631_180 Hb_006916_040--Hb_004631_180 Hb_000576_020 Hb_000576_020 Hb_006916_040--Hb_000576_020 Hb_000256_190 Hb_000256_190 Hb_006916_040--Hb_000256_190 Hb_001051_080 Hb_001051_080 Hb_006916_040--Hb_001051_080 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000076_160--Hb_000358_230 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_000886_050 Hb_000886_050 Hb_002078_220--Hb_000886_050 Hb_000070_080 Hb_000070_080 Hb_002078_220--Hb_000070_080 Hb_002078_220--Hb_000076_160 Hb_008511_090 Hb_008511_090 Hb_002078_220--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_002078_220--Hb_008103_060 Hb_002876_130 Hb_002876_130 Hb_002078_220--Hb_002876_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.742 156.486 95.0327 105.73 75.4525 136.304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.8326 102.543 47.6873 85.1205 19.8544

CAGE analysis