Hb_118301_010

Information

Type -
Description -
Location Contig118301: 271-965
Sequence    

Annotation

kegg
ID tcc:TCM_005016
description Dicer-like 1 isoform 1
nr
ID XP_010107130.1
description Endoribonuclease Dicer-1-like protein [Morus notabilis]
swissprot
ID Q8LMR2
description Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica GN=DCL1 PE=3 SV=1
trembl
ID W9S6M5
description Endoribonuclease Dicer-1-like protein OS=Morus notabilis GN=L484_019609 PE=4 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05465: 253-405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118301_010 0.0 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
2 Hb_000152_740 0.0823745807 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
3 Hb_000017_340 0.095852542 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
4 Hb_005288_120 0.0964698716 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
5 Hb_001252_170 0.0971292922 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
6 Hb_001477_010 0.1032124907 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
7 Hb_000028_030 0.1077112343 - - amidase, putative [Ricinus communis]
8 Hb_000248_050 0.1080218004 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
9 Hb_000042_230 0.1128360071 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
10 Hb_000186_010 0.1148329335 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
11 Hb_013405_130 0.115487536 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
12 Hb_063047_010 0.1190713777 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
13 Hb_000453_270 0.1234693225 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
14 Hb_000085_280 0.1248882687 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
15 Hb_001609_010 0.1299687473 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
16 Hb_002235_360 0.1310719191 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
17 Hb_000136_150 0.1312348291 - - hypothetical protein VITISV_038366 [Vitis vinifera]
18 Hb_002290_060 0.1316431537 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
19 Hb_010261_020 0.1319045392 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
20 Hb_002955_010 0.1322379504 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_118301_010 Hb_118301_010 Hb_000152_740 Hb_000152_740 Hb_118301_010--Hb_000152_740 Hb_000017_340 Hb_000017_340 Hb_118301_010--Hb_000017_340 Hb_005288_120 Hb_005288_120 Hb_118301_010--Hb_005288_120 Hb_001252_170 Hb_001252_170 Hb_118301_010--Hb_001252_170 Hb_001477_010 Hb_001477_010 Hb_118301_010--Hb_001477_010 Hb_000028_030 Hb_000028_030 Hb_118301_010--Hb_000028_030 Hb_063047_010 Hb_063047_010 Hb_000152_740--Hb_063047_010 Hb_005000_100 Hb_005000_100 Hb_000152_740--Hb_005000_100 Hb_000042_230 Hb_000042_230 Hb_000152_740--Hb_000042_230 Hb_000152_740--Hb_000017_340 Hb_000152_740--Hb_000028_030 Hb_004608_020 Hb_004608_020 Hb_000017_340--Hb_004608_020 Hb_000017_340--Hb_005288_120 Hb_000568_040 Hb_000568_040 Hb_000017_340--Hb_000568_040 Hb_000370_030 Hb_000370_030 Hb_000017_340--Hb_000370_030 Hb_000017_340--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000017_340--Hb_000703_080 Hb_035524_030 Hb_035524_030 Hb_005288_120--Hb_035524_030 Hb_010261_020 Hb_010261_020 Hb_005288_120--Hb_010261_020 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_000085_280 Hb_000085_280 Hb_005288_120--Hb_000085_280 Hb_000671_100 Hb_000671_100 Hb_005288_120--Hb_000671_100 Hb_000186_010 Hb_000186_010 Hb_001252_170--Hb_000186_010 Hb_001252_170--Hb_001477_010 Hb_077219_010 Hb_077219_010 Hb_001252_170--Hb_077219_010 Hb_002290_060 Hb_002290_060 Hb_001252_170--Hb_002290_060 Hb_001252_170--Hb_000152_740 Hb_000256_270 Hb_000256_270 Hb_001477_010--Hb_000256_270 Hb_001477_010--Hb_002290_060 Hb_002955_010 Hb_002955_010 Hb_001477_010--Hb_002955_010 Hb_012807_080 Hb_012807_080 Hb_001477_010--Hb_012807_080 Hb_000028_030--Hb_000042_230 Hb_000028_030--Hb_000017_340 Hb_003602_040 Hb_003602_040 Hb_000028_030--Hb_003602_040 Hb_009118_010 Hb_009118_010 Hb_000028_030--Hb_009118_010 Hb_000028_030--Hb_005288_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3445 4.21549 0.269788 2.31629 13.7317 30.4349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7085 4.30888 5.87778 5.85329 2.94837

CAGE analysis