Hb_118419_010

Information

Type transcription factor
Description TF Family: FAR1
Location Contig118419: 4628-6458
Sequence    

Annotation

kegg
ID rcu:RCOM_1627490
description hypothetical protein
nr
ID XP_012084725.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
swissprot
ID Q9M8J3
description Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1
trembl
ID A0A067LA34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15097 PE=4 SV=1
Gene Ontology
ID GO:0006355
description protein far1-related sequence 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118419_010 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
2 Hb_004109_170 0.0581702113 - - PREDICTED: probable ribokinase [Jatropha curcas]
3 Hb_000205_090 0.0600764546 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
4 Hb_000580_090 0.0663322523 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
5 Hb_004195_270 0.0704034285 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
6 Hb_001105_030 0.0725925539 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
7 Hb_000815_320 0.0730932029 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
8 Hb_000787_050 0.0735922866 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
9 Hb_000317_390 0.0736883552 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
10 Hb_000703_350 0.0736954952 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
11 Hb_000260_030 0.0743465103 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
12 Hb_003057_090 0.0751944021 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
13 Hb_012286_030 0.0759453825 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
14 Hb_000331_200 0.0765605379 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
15 Hb_029879_130 0.079227985 - - Derlin-2, putative [Ricinus communis]
16 Hb_028872_080 0.0802379614 - - PREDICTED: adenylate kinase 4-like [Jatropha curcas]
17 Hb_010361_010 0.0807020302 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
18 Hb_007441_330 0.0809520221 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
19 Hb_004116_190 0.0813109491 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
20 Hb_001633_050 0.0819127833 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]

Gene co-expression network

sample Hb_118419_010 Hb_118419_010 Hb_004109_170 Hb_004109_170 Hb_118419_010--Hb_004109_170 Hb_000205_090 Hb_000205_090 Hb_118419_010--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_118419_010--Hb_000580_090 Hb_004195_270 Hb_004195_270 Hb_118419_010--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_118419_010--Hb_001105_030 Hb_000815_320 Hb_000815_320 Hb_118419_010--Hb_000815_320 Hb_004109_170--Hb_000205_090 Hb_004109_170--Hb_000580_090 Hb_000260_030 Hb_000260_030 Hb_004109_170--Hb_000260_030 Hb_012286_030 Hb_012286_030 Hb_004109_170--Hb_012286_030 Hb_006615_240 Hb_006615_240 Hb_004109_170--Hb_006615_240 Hb_010098_050 Hb_010098_050 Hb_000205_090--Hb_010098_050 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_004116_190 Hb_004116_190 Hb_000205_090--Hb_004116_190 Hb_000580_090--Hb_012286_030 Hb_000580_090--Hb_000656_240 Hb_000580_090--Hb_004116_190 Hb_000580_090--Hb_000815_320 Hb_000580_090--Hb_001105_030 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_004195_270--Hb_000205_090 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001821_010 Hb_001821_010 Hb_001105_030--Hb_001821_010 Hb_012725_050 Hb_012725_050 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_001105_030--Hb_000815_320 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63456 4.28523 9.36787 9.30454 9.27363 6.4566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6969 15.7682 12.85 6.08622 7.23473

CAGE analysis