Hb_118419_020

Information

Type transcription factor
Description TF Family: FAR1
Location Contig118419: 6988-10466
Sequence    

Annotation

kegg
ID vvi:100248330
description protein FAR1-RELATED SEQUENCE 5
nr
ID XP_010646072.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID F6I1X0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0174g00130 PE=4 SV=1
Gene Ontology
ID GO:0006355
description protein far1-related sequence 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05480: 7088-9462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118419_020 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
2 Hb_010436_070 0.0556274222 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
3 Hb_000317_430 0.0581825637 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
4 Hb_000175_070 0.0609139778 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
5 Hb_125000_010 0.0610804097 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
6 Hb_002097_110 0.0701033964 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_007193_100 0.0711629396 - - syntaxin family protein [Populus trichocarpa]
8 Hb_000172_370 0.0720131061 - - -
9 Hb_004662_030 0.0722879139 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
10 Hb_001776_110 0.0739368029 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Jatropha curcas]
11 Hb_012340_030 0.0746585931 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
12 Hb_002942_020 0.0748931723 - - nucleotide binding protein, putative [Ricinus communis]
13 Hb_000365_360 0.0755425978 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
14 Hb_003540_040 0.0765161229 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
15 Hb_009711_030 0.0765265076 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
16 Hb_004195_160 0.0768628768 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
17 Hb_001221_230 0.0771606611 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003125_040 0.0772100285 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
19 Hb_168918_020 0.0772350434 - - pectin acetylesterase, putative [Ricinus communis]
20 Hb_007426_230 0.0779660458 - - hypothetical protein CICLE_v10017932mg [Citrus clementina]

Gene co-expression network

sample Hb_118419_020 Hb_118419_020 Hb_010436_070 Hb_010436_070 Hb_118419_020--Hb_010436_070 Hb_000317_430 Hb_000317_430 Hb_118419_020--Hb_000317_430 Hb_000175_070 Hb_000175_070 Hb_118419_020--Hb_000175_070 Hb_125000_010 Hb_125000_010 Hb_118419_020--Hb_125000_010 Hb_002097_110 Hb_002097_110 Hb_118419_020--Hb_002097_110 Hb_007193_100 Hb_007193_100 Hb_118419_020--Hb_007193_100 Hb_010436_070--Hb_125000_010 Hb_000832_140 Hb_000832_140 Hb_010436_070--Hb_000832_140 Hb_009711_030 Hb_009711_030 Hb_010436_070--Hb_009711_030 Hb_010436_070--Hb_002097_110 Hb_000172_370 Hb_000172_370 Hb_010436_070--Hb_000172_370 Hb_000035_380 Hb_000035_380 Hb_000317_430--Hb_000035_380 Hb_000317_430--Hb_000175_070 Hb_060809_010 Hb_060809_010 Hb_000317_430--Hb_060809_010 Hb_000365_360 Hb_000365_360 Hb_000317_430--Hb_000365_360 Hb_000317_430--Hb_007193_100 Hb_000175_070--Hb_007193_100 Hb_029510_140 Hb_029510_140 Hb_000175_070--Hb_029510_140 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_125000_010--Hb_009711_030 Hb_003540_040 Hb_003540_040 Hb_125000_010--Hb_003540_040 Hb_002411_170 Hb_002411_170 Hb_125000_010--Hb_002411_170 Hb_022250_040 Hb_022250_040 Hb_125000_010--Hb_022250_040 Hb_004662_030 Hb_004662_030 Hb_002097_110--Hb_004662_030 Hb_015001_020 Hb_015001_020 Hb_002097_110--Hb_015001_020 Hb_007426_230 Hb_007426_230 Hb_002097_110--Hb_007426_230 Hb_002097_110--Hb_009711_030 Hb_027472_180 Hb_027472_180 Hb_002097_110--Hb_027472_180 Hb_001824_070 Hb_001824_070 Hb_002097_110--Hb_001824_070 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_007193_100--Hb_029510_140 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.888 5.11101 5.05372 7.36164 25.2822 34.0122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.4212 30.9812 19.8351 7.73411 5.79577

CAGE analysis