Hb_118707_010

Information

Type transcription factor
Description TF Family: M-type
Location Contig118707: 4144-4746
Sequence    

Annotation

kegg
ID rcu:RCOM_0101370
description mads box protein, putative
nr
ID XP_002532452.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q9FKK2
description Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1
trembl
ID B9T2I3
description Mads box protein, putative OS=Ricinus communis GN=RCOM_0101370 PE=4 SV=1
Gene Ontology
ID GO:0003677
description mads box

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118707_010 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_176012_010 0.0178263652 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001862_020 0.2224866091 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
4 Hb_003407_020 0.2224911358 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
5 Hb_146361_020 0.2229585035 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
6 Hb_186115_010 0.2230675652 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_176232_040 0.223240988 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002903_030 0.2240487287 - - polyphenol oxidase [Cydonia oblonga]
9 Hb_012355_010 0.2246855594 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
10 Hb_156683_010 0.2277273527 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
11 Hb_000028_540 0.228144898 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
12 Hb_003938_220 0.2286117799 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_002231_140 0.2286143795 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
14 Hb_005656_110 0.2322054718 - - cytochrome P450, putative [Ricinus communis]
15 Hb_006142_010 0.234357795 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
16 Hb_000248_090 0.2351674484 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
17 Hb_001863_050 0.2363531833 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
18 Hb_000115_180 0.2374981373 - - hypothetical protein RCOM_1308310 [Ricinus communis]
19 Hb_004607_010 0.2458593761 - - -
20 Hb_001148_050 0.254494279 - - -

Gene co-expression network

sample Hb_118707_010 Hb_118707_010 Hb_176012_010 Hb_176012_010 Hb_118707_010--Hb_176012_010 Hb_001862_020 Hb_001862_020 Hb_118707_010--Hb_001862_020 Hb_003407_020 Hb_003407_020 Hb_118707_010--Hb_003407_020 Hb_146361_020 Hb_146361_020 Hb_118707_010--Hb_146361_020 Hb_186115_010 Hb_186115_010 Hb_118707_010--Hb_186115_010 Hb_176232_040 Hb_176232_040 Hb_118707_010--Hb_176232_040 Hb_176012_010--Hb_001862_020 Hb_176012_010--Hb_146361_020 Hb_176012_010--Hb_003407_020 Hb_176012_010--Hb_186115_010 Hb_002903_030 Hb_002903_030 Hb_176012_010--Hb_002903_030 Hb_001862_020--Hb_003407_020 Hb_001862_020--Hb_146361_020 Hb_001862_020--Hb_186115_010 Hb_001862_020--Hb_176232_040 Hb_001862_020--Hb_002903_030 Hb_012355_010 Hb_012355_010 Hb_001862_020--Hb_012355_010 Hb_003407_020--Hb_176232_040 Hb_003407_020--Hb_146361_020 Hb_003407_020--Hb_186115_010 Hb_003407_020--Hb_002903_030 Hb_003407_020--Hb_012355_010 Hb_146361_020--Hb_186115_010 Hb_146361_020--Hb_002903_030 Hb_146361_020--Hb_176232_040 Hb_003938_220 Hb_003938_220 Hb_146361_020--Hb_003938_220 Hb_186115_010--Hb_002903_030 Hb_186115_010--Hb_176232_040 Hb_186115_010--Hb_003938_220 Hb_176232_040--Hb_012355_010 Hb_156683_010 Hb_156683_010 Hb_176232_040--Hb_156683_010 Hb_000028_540 Hb_000028_540 Hb_176232_040--Hb_000028_540
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.125617 0.0405578 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.258359 0

CAGE analysis