Hb_118707_020

Information

Type -
Description -
Location Contig118707: 6042-10660
Sequence    

Annotation

kegg
ID rcu:RCOM_0101400
description hypothetical protein
nr
ID XP_002532454.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S0F0
description Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1
trembl
ID B9T2I5
description Formin-like protein OS=Ricinus communis GN=RCOM_0101400 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05547: 5745-10384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118707_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000967_010 0.0603248234 - - hypothetical protein JCGZ_08336 [Jatropha curcas]
3 Hb_008727_030 0.0906750548 - - conserved hypothetical protein [Ricinus communis]
4 Hb_188923_010 0.0945369877 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
5 Hb_135811_040 0.096588535 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003435_070 0.0992882357 - - PREDICTED: probable pectate lyase 12 isoform X3 [Jatropha curcas]
7 Hb_000380_210 0.1069590791 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
8 Hb_000032_560 0.1074583657 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
9 Hb_005333_120 0.1137153241 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
10 Hb_005144_180 0.11527413 - - PREDICTED: protein enabled homolog [Populus euphratica]
11 Hb_018133_110 0.1167683086 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_003734_120 0.1177093779 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
13 Hb_003058_180 0.1197169918 transcription factor TF Family: HSF hypothetical protein POPTR_0001s28040g [Populus trichocarpa]
14 Hb_000139_500 0.1198298671 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
15 Hb_006637_040 0.120842583 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
16 Hb_001053_110 0.1219448621 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
17 Hb_000318_060 0.1259833801 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004462_040 0.1284847231 - - unnamed protein product [Vitis vinifera]
19 Hb_003805_080 0.1294731965 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
20 Hb_011452_020 0.1297224551 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_118707_020 Hb_118707_020 Hb_000967_010 Hb_000967_010 Hb_118707_020--Hb_000967_010 Hb_008727_030 Hb_008727_030 Hb_118707_020--Hb_008727_030 Hb_188923_010 Hb_188923_010 Hb_118707_020--Hb_188923_010 Hb_135811_040 Hb_135811_040 Hb_118707_020--Hb_135811_040 Hb_003435_070 Hb_003435_070 Hb_118707_020--Hb_003435_070 Hb_000380_210 Hb_000380_210 Hb_118707_020--Hb_000380_210 Hb_000967_010--Hb_188923_010 Hb_000967_010--Hb_008727_030 Hb_000967_010--Hb_003435_070 Hb_011452_020 Hb_011452_020 Hb_000967_010--Hb_011452_020 Hb_000967_010--Hb_135811_040 Hb_008727_030--Hb_003435_070 Hb_003789_020 Hb_003789_020 Hb_008727_030--Hb_003789_020 Hb_005144_180 Hb_005144_180 Hb_008727_030--Hb_005144_180 Hb_011139_010 Hb_011139_010 Hb_008727_030--Hb_011139_010 Hb_003805_080 Hb_003805_080 Hb_188923_010--Hb_003805_080 Hb_003787_060 Hb_003787_060 Hb_188923_010--Hb_003787_060 Hb_003058_180 Hb_003058_180 Hb_188923_010--Hb_003058_180 Hb_001863_080 Hb_001863_080 Hb_188923_010--Hb_001863_080 Hb_135811_040--Hb_188923_010 Hb_002016_020 Hb_002016_020 Hb_135811_040--Hb_002016_020 Hb_135811_040--Hb_003058_180 Hb_000032_560 Hb_000032_560 Hb_135811_040--Hb_000032_560 Hb_005333_120 Hb_005333_120 Hb_003435_070--Hb_005333_120 Hb_001856_150 Hb_001856_150 Hb_003435_070--Hb_001856_150 Hb_003435_070--Hb_003058_180 Hb_000380_210--Hb_000967_010 Hb_021418_010 Hb_021418_010 Hb_000380_210--Hb_021418_010 Hb_000380_210--Hb_008727_030 Hb_018133_110 Hb_018133_110 Hb_000380_210--Hb_018133_110 Hb_000380_210--Hb_000032_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110826 2.9253 2.01184 12.2101 0.0485848 0.0248788
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 23.0401 1.7631

CAGE analysis