Hb_118707_030

Information

Type -
Description -
Location Contig118707: 29827-35571
Sequence    

Annotation

kegg
ID bvg:104894475
description mediator of RNA polymerase II transcription subunit 19a-like
nr
ID XP_010679015.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
swissprot
ID Q9FMP0
description Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1
trembl
ID A0A061DNR0
description Mediator of RNA polymerase II transcription subunit 19 OS=Theobroma cacao GN=TCM_002578 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118707_030 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
2 Hb_002214_040 0.055890708 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_002205_070 0.0584964061 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
4 Hb_011689_080 0.060921264 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
5 Hb_000815_040 0.0631586447 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
6 Hb_000656_400 0.064051241 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
7 Hb_000107_620 0.0665451643 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
8 Hb_000398_180 0.0671193334 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
9 Hb_000920_180 0.0672352762 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
10 Hb_003001_120 0.0676026524 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
11 Hb_000529_190 0.067910996 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
12 Hb_000243_030 0.0687388873 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
13 Hb_063716_050 0.0689059383 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
14 Hb_005993_040 0.0692310029 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
15 Hb_006541_030 0.0705313806 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
16 Hb_001259_090 0.0712943852 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
17 Hb_009838_080 0.0725597708 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
18 Hb_000103_560 0.072600536 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_000056_200 0.0737132355 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
20 Hb_063090_010 0.0741019548 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_118707_030 Hb_118707_030 Hb_002214_040 Hb_002214_040 Hb_118707_030--Hb_002214_040 Hb_002205_070 Hb_002205_070 Hb_118707_030--Hb_002205_070 Hb_011689_080 Hb_011689_080 Hb_118707_030--Hb_011689_080 Hb_000815_040 Hb_000815_040 Hb_118707_030--Hb_000815_040 Hb_000656_400 Hb_000656_400 Hb_118707_030--Hb_000656_400 Hb_000107_620 Hb_000107_620 Hb_118707_030--Hb_000107_620 Hb_000529_190 Hb_000529_190 Hb_002214_040--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_002214_040--Hb_000832_140 Hb_002477_070 Hb_002477_070 Hb_002214_040--Hb_002477_070 Hb_009838_080 Hb_009838_080 Hb_002214_040--Hb_009838_080 Hb_002214_040--Hb_000815_040 Hb_002205_070--Hb_000107_620 Hb_002205_070--Hb_009838_080 Hb_000236_070 Hb_000236_070 Hb_002205_070--Hb_000236_070 Hb_017904_010 Hb_017904_010 Hb_002205_070--Hb_017904_010 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_000398_180 Hb_000398_180 Hb_011689_080--Hb_000398_180 Hb_003058_130 Hb_003058_130 Hb_011689_080--Hb_003058_130 Hb_003392_040 Hb_003392_040 Hb_011689_080--Hb_003392_040 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_001377_290 Hb_001377_290 Hb_011689_080--Hb_001377_290 Hb_001604_080 Hb_001604_080 Hb_000815_040--Hb_001604_080 Hb_002890_140 Hb_002890_140 Hb_000815_040--Hb_002890_140 Hb_000103_560 Hb_000103_560 Hb_000815_040--Hb_000103_560 Hb_000815_040--Hb_000529_190 Hb_003126_080 Hb_003126_080 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_001226_160 Hb_001226_160 Hb_000656_400--Hb_001226_160 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_000107_620--Hb_009838_080 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_011571_010 Hb_011571_010 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7548 8.85701 10.2889 8.94216 19.6606 26.6392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.6149 30.2001 18.726 10.8143 11.7064

CAGE analysis