Hb_118730_050

Information

Type -
Description -
Location Contig118730: 28526-30049
Sequence    

Annotation

kegg
ID tcc:TCM_032113
description RING/U-box superfamily protein isoform 1
nr
ID XP_007021985.1
description RING/U-box superfamily protein isoform 4 [Theobroma cacao]
swissprot
ID F4HRI2
description E3 ubiquitin-protein ligase CCNB1IP1 homolog OS=Arabidopsis thaliana GN=HEI10 PE=2 SV=1
trembl
ID A0A061F817
description RING/U-box superfamily protein isoform 4 OS=Theobroma cacao GN=TCM_032113 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase ccnb1ip1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118730_050 0.0 - - RING/U-box superfamily protein isoform 4 [Theobroma cacao]
2 Hb_002783_290 0.0001303307 - - Uncharacterized protein TCM_034216 [Theobroma cacao]
3 Hb_178734_010 0.003109678 - - PREDICTED: uncharacterized protein LOC103331175 [Prunus mume]
4 Hb_049573_010 0.0071063475 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003874_030 0.0122193902 - - hypothetical protein JCGZ_00004 [Jatropha curcas]
6 Hb_005914_190 0.0193964287 - - PREDICTED: acid phosphatase 1-like [Populus euphratica]
7 Hb_000194_040 0.0204182522 - - carbonic anhydrase, putative [Ricinus communis]
8 Hb_054865_110 0.0208858059 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000628_090 0.0221483877 - - hypothetical protein B456_010G019400 [Gossypium raimondii]
10 Hb_010261_070 0.0230678672 - - hypothetical protein B456_009G094800 [Gossypium raimondii]
11 Hb_099538_020 0.0253591378 - - hypothetical protein POPTR_0010s12650g [Populus trichocarpa]
12 Hb_111442_010 0.0276375082 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
13 Hb_000422_100 0.0304719229 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
14 Hb_002289_160 0.0310957126 - - Polygalacturonase precursor, putative [Ricinus communis]
15 Hb_002601_030 0.0312299192 - - PREDICTED: uncharacterized protein LOC105634908 [Jatropha curcas]
16 Hb_027136_030 0.0315271191 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_001347_020 0.0317408328 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
18 Hb_149495_010 0.0320217719 - - putative starch phosphorylase, partial [Sorghum bicolor]
19 Hb_000389_120 0.032838284 - - hypothetical protein JCGZ_20066 [Jatropha curcas]
20 Hb_130357_010 0.0422982965 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_118730_050 Hb_118730_050 Hb_002783_290 Hb_002783_290 Hb_118730_050--Hb_002783_290 Hb_178734_010 Hb_178734_010 Hb_118730_050--Hb_178734_010 Hb_049573_010 Hb_049573_010 Hb_118730_050--Hb_049573_010 Hb_003874_030 Hb_003874_030 Hb_118730_050--Hb_003874_030 Hb_005914_190 Hb_005914_190 Hb_118730_050--Hb_005914_190 Hb_000194_040 Hb_000194_040 Hb_118730_050--Hb_000194_040 Hb_002783_290--Hb_178734_010 Hb_002783_290--Hb_049573_010 Hb_002783_290--Hb_003874_030 Hb_002783_290--Hb_005914_190 Hb_002783_290--Hb_000194_040 Hb_178734_010--Hb_049573_010 Hb_178734_010--Hb_003874_030 Hb_178734_010--Hb_005914_190 Hb_010261_070 Hb_010261_070 Hb_178734_010--Hb_010261_070 Hb_049573_010--Hb_003874_030 Hb_049573_010--Hb_005914_190 Hb_049573_010--Hb_010261_070 Hb_003874_030--Hb_005914_190 Hb_003874_030--Hb_010261_070 Hb_005914_190--Hb_010261_070 Hb_099538_020 Hb_099538_020 Hb_005914_190--Hb_099538_020 Hb_002289_160 Hb_002289_160 Hb_005914_190--Hb_002289_160 Hb_027136_030 Hb_027136_030 Hb_005914_190--Hb_027136_030 Hb_054865_110 Hb_054865_110 Hb_000194_040--Hb_054865_110 Hb_000628_090 Hb_000628_090 Hb_000194_040--Hb_000628_090 Hb_111442_010 Hb_111442_010 Hb_000194_040--Hb_111442_010 Hb_000422_100 Hb_000422_100 Hb_000194_040--Hb_000422_100 Hb_001347_020 Hb_001347_020 Hb_000194_040--Hb_001347_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0404812 0.569439 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis