Hb_118840_030

Information

Type -
Description -
Location Contig118840: 26990-35024
Sequence    

Annotation

kegg
ID rcu:RCOM_1176410
description vacuolar membrane protein pep3, putative
nr
ID XP_012088360.1
description PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
swissprot
ID P59015
description Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio GN=vps18 PE=2 SV=2
trembl
ID A0A067JN17
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25850 PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 18 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05578: 27355-29130 , PASA_asmbl_05579: 29349-29494 , PASA_asmbl_05580: 29712-63592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118840_030 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
2 Hb_002260_080 0.0615848257 - - Aldehyde dehydrogenase family 6 member B2 [Morus notabilis]
3 Hb_001977_010 0.0762705686 - - PREDICTED: uncharacterized protein LOC105636485 isoform X2 [Jatropha curcas]
4 Hb_011287_080 0.0804024912 - - conserved hypothetical protein [Ricinus communis]
5 Hb_030627_060 0.0838504168 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
6 Hb_000446_120 0.1011869245 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
7 Hb_000046_180 0.1021779443 - - PREDICTED: uncharacterized protein LOC105631840 [Jatropha curcas]
8 Hb_001401_060 0.1022918616 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
9 Hb_005701_070 0.1041717158 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
10 Hb_002044_170 0.104478496 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
11 Hb_000158_100 0.1055985281 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007456_040 0.1086387565 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [Jatropha curcas]
13 Hb_004875_030 0.1095770443 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
14 Hb_000740_100 0.1096662184 - - calpain, putative [Ricinus communis]
15 Hb_011310_160 0.1097678867 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
16 Hb_116929_010 0.1113725491 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
17 Hb_002400_240 0.1115172582 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
18 Hb_000284_120 0.1116412111 - - PREDICTED: uncharacterized protein LOC105629656 [Jatropha curcas]
19 Hb_002909_090 0.1121177547 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]
20 Hb_000261_030 0.113495055 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]

Gene co-expression network

sample Hb_118840_030 Hb_118840_030 Hb_002260_080 Hb_002260_080 Hb_118840_030--Hb_002260_080 Hb_001977_010 Hb_001977_010 Hb_118840_030--Hb_001977_010 Hb_011287_080 Hb_011287_080 Hb_118840_030--Hb_011287_080 Hb_030627_060 Hb_030627_060 Hb_118840_030--Hb_030627_060 Hb_000446_120 Hb_000446_120 Hb_118840_030--Hb_000446_120 Hb_000046_180 Hb_000046_180 Hb_118840_030--Hb_000046_180 Hb_002260_080--Hb_001977_010 Hb_002260_080--Hb_011287_080 Hb_002260_080--Hb_000046_180 Hb_000158_100 Hb_000158_100 Hb_002260_080--Hb_000158_100 Hb_011310_160 Hb_011310_160 Hb_002260_080--Hb_011310_160 Hb_002391_370 Hb_002391_370 Hb_001977_010--Hb_002391_370 Hb_001452_220 Hb_001452_220 Hb_001977_010--Hb_001452_220 Hb_002909_090 Hb_002909_090 Hb_001977_010--Hb_002909_090 Hb_001977_010--Hb_000158_100 Hb_000556_220 Hb_000556_220 Hb_011287_080--Hb_000556_220 Hb_061878_010 Hb_061878_010 Hb_011287_080--Hb_061878_010 Hb_000680_110 Hb_000680_110 Hb_011287_080--Hb_000680_110 Hb_041327_010 Hb_041327_010 Hb_011287_080--Hb_041327_010 Hb_003060_060 Hb_003060_060 Hb_011287_080--Hb_003060_060 Hb_002044_170 Hb_002044_170 Hb_030627_060--Hb_002044_170 Hb_030627_060--Hb_000446_120 Hb_005731_090 Hb_005731_090 Hb_030627_060--Hb_005731_090 Hb_002329_040 Hb_002329_040 Hb_030627_060--Hb_002329_040 Hb_148909_030 Hb_148909_030 Hb_030627_060--Hb_148909_030 Hb_001235_230 Hb_001235_230 Hb_030627_060--Hb_001235_230 Hb_005701_070 Hb_005701_070 Hb_000446_120--Hb_005701_070 Hb_002784_110 Hb_002784_110 Hb_000446_120--Hb_002784_110 Hb_000446_120--Hb_002329_040 Hb_000740_100 Hb_000740_100 Hb_000446_120--Hb_000740_100 Hb_025194_040 Hb_025194_040 Hb_000446_120--Hb_025194_040 Hb_003284_030 Hb_003284_030 Hb_000046_180--Hb_003284_030 Hb_000949_010 Hb_000949_010 Hb_000046_180--Hb_000949_010 Hb_001401_060 Hb_001401_060 Hb_000046_180--Hb_001401_060 Hb_174865_020 Hb_174865_020 Hb_000046_180--Hb_174865_020 Hb_011947_050 Hb_011947_050 Hb_000046_180--Hb_011947_050 Hb_000046_180--Hb_002044_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0795 12.5452 5.17029 10.2001 17.5946 20.67
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.62712 1.93928 7.38422 17.1455 11.7831

CAGE analysis