Hb_118840_050

Information

Type -
Description -
Location Contig118840: 60742-63542
Sequence    

Annotation

kegg
ID zma:103641096
description vacuolar protein sorting-associated protein 18 homolog
nr
ID KDO55777.1
description hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
swissprot
ID Q24314
description Vacuolar protein sorting-associated protein 18 homolog OS=Drosophila melanogaster GN=dor PE=1 SV=3
trembl
ID A0A067EX53
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0019781mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description vacuolar protein sorting-associated protein 18 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05580: 29712-63592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118840_050 0.0 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
2 Hb_000917_160 0.0639660244 - - PREDICTED: protein decapping 5 isoform X1 [Jatropha curcas]
3 Hb_000191_130 0.0656547223 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
4 Hb_000062_470 0.0703634311 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
5 Hb_000577_030 0.0714855978 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
6 Hb_000230_430 0.0779573937 - - catalytic, putative [Ricinus communis]
7 Hb_001047_200 0.0795956655 - - PREDICTED: pre-mRNA-splicing factor 18 [Eucalyptus grandis]
8 Hb_003040_020 0.0803039969 - - PREDICTED: protein cereblon [Jatropha curcas]
9 Hb_002890_100 0.0808468925 - - PREDICTED: mitotic spindle checkpoint protein MAD1 isoform X1 [Jatropha curcas]
10 Hb_000768_180 0.0809097285 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
11 Hb_001021_200 0.0821077117 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
12 Hb_000406_230 0.0829137349 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
13 Hb_013749_020 0.0829316916 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
14 Hb_000958_150 0.0833602417 - - Actin, putative [Ricinus communis]
15 Hb_000960_050 0.0839344516 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
16 Hb_000264_080 0.0841999138 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
17 Hb_002374_320 0.0847160013 - - hypothetical protein JCGZ_12107 [Jatropha curcas]
18 Hb_000184_150 0.0848895105 - - PREDICTED: U-box domain-containing protein 15 [Jatropha curcas]
19 Hb_001832_130 0.0851071051 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
20 Hb_000625_120 0.0852334462 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]

Gene co-expression network

sample Hb_118840_050 Hb_118840_050 Hb_000917_160 Hb_000917_160 Hb_118840_050--Hb_000917_160 Hb_000191_130 Hb_000191_130 Hb_118840_050--Hb_000191_130 Hb_000062_470 Hb_000062_470 Hb_118840_050--Hb_000062_470 Hb_000577_030 Hb_000577_030 Hb_118840_050--Hb_000577_030 Hb_000230_430 Hb_000230_430 Hb_118840_050--Hb_000230_430 Hb_001047_200 Hb_001047_200 Hb_118840_050--Hb_001047_200 Hb_000917_160--Hb_000062_470 Hb_000917_160--Hb_000191_130 Hb_000406_230 Hb_000406_230 Hb_000917_160--Hb_000406_230 Hb_007558_070 Hb_007558_070 Hb_000917_160--Hb_007558_070 Hb_010417_060 Hb_010417_060 Hb_000917_160--Hb_010417_060 Hb_000191_130--Hb_000062_470 Hb_004429_160 Hb_004429_160 Hb_000191_130--Hb_004429_160 Hb_000010_360 Hb_000010_360 Hb_000191_130--Hb_000010_360 Hb_000640_310 Hb_000640_310 Hb_000191_130--Hb_000640_310 Hb_000032_010 Hb_000032_010 Hb_000191_130--Hb_000032_010 Hb_000062_470--Hb_010417_060 Hb_000661_200 Hb_000661_200 Hb_000062_470--Hb_000661_200 Hb_000062_470--Hb_004429_160 Hb_007813_030 Hb_007813_030 Hb_000062_470--Hb_007813_030 Hb_001021_200 Hb_001021_200 Hb_000577_030--Hb_001021_200 Hb_000577_030--Hb_001047_200 Hb_000184_150 Hb_000184_150 Hb_000577_030--Hb_000184_150 Hb_000577_030--Hb_000917_160 Hb_032920_130 Hb_032920_130 Hb_000577_030--Hb_032920_130 Hb_001243_060 Hb_001243_060 Hb_000230_430--Hb_001243_060 Hb_002902_020 Hb_002902_020 Hb_000230_430--Hb_002902_020 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000264_070 Hb_000264_070 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_000823_030 Hb_000823_030 Hb_001047_200--Hb_000823_030 Hb_000236_470 Hb_000236_470 Hb_001047_200--Hb_000236_470 Hb_001047_200--Hb_000184_150 Hb_001047_200--Hb_001021_200 Hb_005542_050 Hb_005542_050 Hb_001047_200--Hb_005542_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.3786 87.9036 53.4673 36.1725 71.5502 59.3128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.7022 18.1628 17.9408 46.4301 25.9388

CAGE analysis