Hb_118909_010

Information

Type -
Description -
Location Contig118909: 44-2116
Sequence    

Annotation

kegg
ID sot:102588546
description uncharacterized LOC102588546
nr
ID XP_006364031.1
description PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID Q948N8
description TdcA1-ORF1-ORF2 protein (Fragment) OS=Daucus carota GN=TdcA1-ORF1-ORF2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118909_010 0.0 - - PREDICTED: uncharacterized protein LOC102588546 [Solanum tuberosum]
2 Hb_186634_010 0.0023367881 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_108160_010 0.0091389775 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
4 Hb_001234_090 0.0092343144 - - hypothetical protein CISIN_1g013527mg [Citrus sinensis]
5 Hb_121689_030 0.0100403847 - - hypothetical protein, partial [Staphylococcus aureus]
6 Hb_029695_040 0.0101573168 - - Pectate lyase precursor, putative [Ricinus communis]
7 Hb_000173_090 0.0106996277 - - -
8 Hb_008145_020 0.0112086344 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
9 Hb_003940_060 0.0131221677 - - PREDICTED: uncharacterized protein LOC105784680 [Gossypium raimondii]
10 Hb_000208_070 0.0148579319 - - -
11 Hb_093458_030 0.0199777426 - - Cellulose synthase A catalytic subunit 1 [UDP-forming], putative [Ricinus communis]
12 Hb_028665_010 0.0199861956 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
13 Hb_032683_010 0.0210994754 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_002387_030 0.0301960594 - - conserved hypothetical protein [Ricinus communis]
15 Hb_042083_020 0.0402349061 - - -
16 Hb_007622_010 0.0411077399 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
17 Hb_000175_310 0.0422048567 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_002110_220 0.0448893151 - - conserved hypothetical protein [Ricinus communis]
19 Hb_109791_010 0.0488414194 - - -
20 Hb_000684_460 0.0541998004 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]

Gene co-expression network

sample Hb_118909_010 Hb_118909_010 Hb_186634_010 Hb_186634_010 Hb_118909_010--Hb_186634_010 Hb_108160_010 Hb_108160_010 Hb_118909_010--Hb_108160_010 Hb_001234_090 Hb_001234_090 Hb_118909_010--Hb_001234_090 Hb_121689_030 Hb_121689_030 Hb_118909_010--Hb_121689_030 Hb_029695_040 Hb_029695_040 Hb_118909_010--Hb_029695_040 Hb_000173_090 Hb_000173_090 Hb_118909_010--Hb_000173_090 Hb_186634_010--Hb_001234_090 Hb_186634_010--Hb_029695_040 Hb_003940_060 Hb_003940_060 Hb_186634_010--Hb_003940_060 Hb_186634_010--Hb_108160_010 Hb_186634_010--Hb_121689_030 Hb_108160_010--Hb_121689_030 Hb_108160_010--Hb_000173_090 Hb_008145_020 Hb_008145_020 Hb_108160_010--Hb_008145_020 Hb_000208_070 Hb_000208_070 Hb_108160_010--Hb_000208_070 Hb_093458_030 Hb_093458_030 Hb_108160_010--Hb_093458_030 Hb_001234_090--Hb_029695_040 Hb_001234_090--Hb_003940_060 Hb_001234_090--Hb_108160_010 Hb_001234_090--Hb_121689_030 Hb_121689_030--Hb_000173_090 Hb_121689_030--Hb_008145_020 Hb_121689_030--Hb_000208_070 Hb_121689_030--Hb_093458_030 Hb_028665_010 Hb_028665_010 Hb_121689_030--Hb_028665_010 Hb_029695_040--Hb_003940_060 Hb_029695_040--Hb_108160_010 Hb_002387_030 Hb_002387_030 Hb_029695_040--Hb_002387_030 Hb_000173_090--Hb_008145_020 Hb_000173_090--Hb_000208_070 Hb_000173_090--Hb_093458_030 Hb_000173_090--Hb_028665_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0742869 0.120976

CAGE analysis