Hb_118977_020

Information

Type -
Description -
Location Contig118977: 2672-5361
Sequence    

Annotation

kegg
ID cic:CICLE_v10022696mg
description hypothetical protein
nr
ID XP_012070405.1
description PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
swissprot
ID Q6ID70
description Uncharacterized protein At3g03773 OS=Arabidopsis thaliana GN=At3g03773 PE=1 SV=1
trembl
ID A0A067L6G0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02684 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05612: 2724-5378
cDNA
(Sanger)
(ID:Location)		 004_F22.ab1: 2919-5318 , 022_O14.ab1: 3000-5318 , 023_J10.ab1: 3059-5378 , 029_A12.ab1: 3064-5291 , 031_G13.ab1: 2922-5318 , 033_F22.ab1: 2976-5308 , 046_H08.ab1: 2913-5291 , 046_J22.ab1: 2940-5291

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118977_020 0.0 - - PREDICTED: uncharacterized protein At3g03773 [Jatropha curcas]
2 Hb_003086_110 0.0664084528 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
3 Hb_007166_050 0.0677563277 - - -
4 Hb_001019_090 0.0737684356 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
5 Hb_000617_320 0.0748764203 - - 40S ribosomal protein S21B [Hevea brasiliensis]
6 Hb_001437_040 0.0757420887 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
7 Hb_157854_010 0.0795355884 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
8 Hb_027892_060 0.0797627441 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
9 Hb_003125_040 0.0800385455 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
10 Hb_006569_020 0.0802394334 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
11 Hb_000282_060 0.0815118305 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
12 Hb_006447_010 0.0821214226 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
13 Hb_033491_010 0.0821306481 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
14 Hb_000272_100 0.0828859731 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
15 Hb_098709_010 0.0830807661 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
16 Hb_159558_030 0.0837059712 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
17 Hb_002400_220 0.0838579022 - - Vesicle-associated membrane protein, putative [Ricinus communis]
18 Hb_134226_010 0.0853470489 - - 40S ribosomal protein S21e, putative [Ricinus communis]
19 Hb_001047_010 0.0891661222 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000045_130 0.0893161692 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]

Gene co-expression network

sample Hb_118977_020 Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_118977_020--Hb_003086_110 Hb_007166_050 Hb_007166_050 Hb_118977_020--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_118977_020--Hb_001019_090 Hb_000617_320 Hb_000617_320 Hb_118977_020--Hb_000617_320 Hb_001437_040 Hb_001437_040 Hb_118977_020--Hb_001437_040 Hb_157854_010 Hb_157854_010 Hb_118977_020--Hb_157854_010 Hb_003086_110--Hb_007166_050 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_003086_110--Hb_001437_040 Hb_003086_110--Hb_000617_320 Hb_007166_050--Hb_000617_320 Hb_007166_050--Hb_001019_090 Hb_007166_050--Hb_001437_040 Hb_000316_110 Hb_000316_110 Hb_007166_050--Hb_000316_110 Hb_004297_100 Hb_004297_100 Hb_001019_090--Hb_004297_100 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_000483_160 Hb_000483_160 Hb_001019_090--Hb_000483_160 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_000617_320--Hb_004297_100 Hb_006569_020 Hb_006569_020 Hb_001437_040--Hb_006569_020 Hb_098709_010 Hb_098709_010 Hb_001437_040--Hb_098709_010 Hb_003453_010 Hb_003453_010 Hb_001437_040--Hb_003453_010 Hb_002762_060 Hb_002762_060 Hb_157854_010--Hb_002762_060 Hb_157854_010--Hb_003086_020 Hb_003185_020 Hb_003185_020 Hb_157854_010--Hb_003185_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_004607_140 Hb_004607_140 Hb_157854_010--Hb_004607_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.375 36.6647 19.246 34.4295 130.592 170.036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
182.349 142.365 87.0473 30.6435 6.72109

CAGE analysis