Hb_119044_040

Information

Type -
Description -
Location Contig119044: 36731-39591
Sequence    

Annotation

kegg
ID rcu:RCOM_1632300
description cyclin B, putative
nr
ID XP_002517277.1
description cyclin B, putative [Ricinus communis]
swissprot
ID P25011
description G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1
trembl
ID B9RU58
description Cyclin B, putative OS=Ricinus communis GN=RCOM_1632300 PE=3 SV=1
Gene Ontology
ID GO:0005634
description g2 mitotic-specific cyclin s13-7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05622: 36835-39577
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119044_040 0.0 - - cyclin B, putative [Ricinus communis]
2 Hb_003776_050 0.0445645387 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
3 Hb_001279_110 0.0507398038 - - PREDICTED: uncharacterized protein LOC105633338 isoform X4 [Jatropha curcas]
4 Hb_000085_360 0.0534702283 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
5 Hb_004631_040 0.0565354923 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
6 Hb_001969_120 0.0583737134 - - PREDICTED: plectin [Jatropha curcas]
7 Hb_011849_010 0.05967643 - - PREDICTED: kinesin-like protein KIFC3 isoform X4 [Jatropha curcas]
8 Hb_003398_050 0.0621922103 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
9 Hb_000060_030 0.0623882927 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like [Jatropha curcas]
10 Hb_001699_070 0.0634400408 - - conserved hypothetical protein [Ricinus communis]
11 Hb_080952_060 0.0650812719 - - PREDICTED: patellin-4 [Populus euphratica]
12 Hb_000614_200 0.0654814974 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
13 Hb_004032_390 0.068508863 - - CDK, putative [Ricinus communis]
14 Hb_002928_150 0.0698773046 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
15 Hb_002686_070 0.0699013577 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002374_090 0.0701057937 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
17 Hb_001220_020 0.0737896628 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
18 Hb_001998_180 0.0766098183 - - actin binding protein, putative [Ricinus communis]
19 Hb_005276_090 0.0767412115 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
20 Hb_162378_020 0.0768208056 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]

Gene co-expression network

sample Hb_119044_040 Hb_119044_040 Hb_003776_050 Hb_003776_050 Hb_119044_040--Hb_003776_050 Hb_001279_110 Hb_001279_110 Hb_119044_040--Hb_001279_110 Hb_000085_360 Hb_000085_360 Hb_119044_040--Hb_000085_360 Hb_004631_040 Hb_004631_040 Hb_119044_040--Hb_004631_040 Hb_001969_120 Hb_001969_120 Hb_119044_040--Hb_001969_120 Hb_011849_010 Hb_011849_010 Hb_119044_040--Hb_011849_010 Hb_003776_050--Hb_001969_120 Hb_003398_050 Hb_003398_050 Hb_003776_050--Hb_003398_050 Hb_000614_200 Hb_000614_200 Hb_003776_050--Hb_000614_200 Hb_002928_150 Hb_002928_150 Hb_003776_050--Hb_002928_150 Hb_000060_030 Hb_000060_030 Hb_003776_050--Hb_000060_030 Hb_001279_110--Hb_000060_030 Hb_000116_050 Hb_000116_050 Hb_001279_110--Hb_000116_050 Hb_012395_040 Hb_012395_040 Hb_001279_110--Hb_012395_040 Hb_001279_110--Hb_003776_050 Hb_001279_110--Hb_002928_150 Hb_000085_360--Hb_004631_040 Hb_005276_090 Hb_005276_090 Hb_000085_360--Hb_005276_090 Hb_000085_360--Hb_001279_110 Hb_000038_070 Hb_000038_070 Hb_000085_360--Hb_000038_070 Hb_080952_060 Hb_080952_060 Hb_000085_360--Hb_080952_060 Hb_004592_030 Hb_004592_030 Hb_004631_040--Hb_004592_030 Hb_004197_020 Hb_004197_020 Hb_004631_040--Hb_004197_020 Hb_004631_040--Hb_001279_110 Hb_002874_010 Hb_002874_010 Hb_004631_040--Hb_002874_010 Hb_005618_070 Hb_005618_070 Hb_001969_120--Hb_005618_070 Hb_001969_120--Hb_003398_050 Hb_001969_120--Hb_001279_110 Hb_001969_120--Hb_002928_150 Hb_011849_010--Hb_000614_200 Hb_011849_010--Hb_003776_050 Hb_002374_090 Hb_002374_090 Hb_011849_010--Hb_002374_090 Hb_011849_010--Hb_000038_070 Hb_000316_070 Hb_000316_070 Hb_011849_010--Hb_000316_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.111863 0.531019 38.3542 14.7941 0.0105475 0.0307219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.025624 0 0.0381059 3.61359 1.74064

CAGE analysis