Hb_119441_010

Information

Type -
Description -
Location Contig119441: 60-944
Sequence    

Annotation

kegg
ID cit:102616369
description probable LRR receptor-like serine/threonine-protein kinase At4g36180-like
nr
ID KDO50394.1
description hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID A0A067E5A4
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0477971mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119441_010 0.0 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
2 Hb_000369_150 0.0239272987 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
3 Hb_005643_010 0.0505183645 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
4 Hb_001331_050 0.0532543444 - - hypothetical protein VITISV_022439 [Vitis vinifera]
5 Hb_000879_100 0.0600435343 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
6 Hb_004098_010 0.0629236021 - - -
7 Hb_000128_010 0.0772937359 - - dimethylaniline monooxygenase, putative [Ricinus communis]
8 Hb_176149_010 0.0797575645 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
9 Hb_000656_360 0.0865267952 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
10 Hb_006351_080 0.0927363604 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
11 Hb_066262_010 0.0945664636 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
12 Hb_004586_380 0.1010337306 - - purine transporter, putative [Ricinus communis]
13 Hb_003847_140 0.1014916391 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
14 Hb_005163_010 0.1111722147 - - PREDICTED: probable terpene synthase 11 [Jatropha curcas]
15 Hb_000277_020 0.1158319318 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
16 Hb_045810_010 0.1233608846 - - PREDICTED: laccase-12-like [Jatropha curcas]
17 Hb_001510_050 0.1265386291 - - zinc finger protein, putative [Ricinus communis]
18 Hb_011924_030 0.1293705461 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_004656_030 0.1304556935 - - putative pectin methylesterase family protein [Populus trichocarpa]
20 Hb_000035_360 0.1311586021 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]

Gene co-expression network

sample Hb_119441_010 Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_119441_010--Hb_000369_150 Hb_005643_010 Hb_005643_010 Hb_119441_010--Hb_005643_010 Hb_001331_050 Hb_001331_050 Hb_119441_010--Hb_001331_050 Hb_000879_100 Hb_000879_100 Hb_119441_010--Hb_000879_100 Hb_004098_010 Hb_004098_010 Hb_119441_010--Hb_004098_010 Hb_000128_010 Hb_000128_010 Hb_119441_010--Hb_000128_010 Hb_000369_150--Hb_004098_010 Hb_000369_150--Hb_000879_100 Hb_000369_150--Hb_000128_010 Hb_176149_010 Hb_176149_010 Hb_000369_150--Hb_176149_010 Hb_000369_150--Hb_005643_010 Hb_005643_010--Hb_001331_050 Hb_005643_010--Hb_000879_100 Hb_066262_010 Hb_066262_010 Hb_005643_010--Hb_066262_010 Hb_000277_020 Hb_000277_020 Hb_005643_010--Hb_000277_020 Hb_001331_050--Hb_000369_150 Hb_001331_050--Hb_000879_100 Hb_045810_010 Hb_045810_010 Hb_001331_050--Hb_045810_010 Hb_006351_080 Hb_006351_080 Hb_001331_050--Hb_006351_080 Hb_000879_100--Hb_066262_010 Hb_003847_140 Hb_003847_140 Hb_000879_100--Hb_003847_140 Hb_004098_010--Hb_000128_010 Hb_004098_010--Hb_176149_010 Hb_001510_050 Hb_001510_050 Hb_004098_010--Hb_001510_050 Hb_004098_010--Hb_006351_080 Hb_000128_010--Hb_176149_010 Hb_000128_010--Hb_006351_080 Hb_004586_380 Hb_004586_380 Hb_000128_010--Hb_004586_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.35949 0 0.113145 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.150131 0

CAGE analysis