Hb_119494_010

Information

Type -
Description -
Location Contig119494: 312-4325
Sequence    

Annotation

kegg
ID rcu:RCOM_1771090
description hypothetical protein
nr
ID XP_012092620.1
description PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
swissprot
ID Q3UFB2
description Box C/D snoRNA protein 1 OS=Mus musculus GN=Znhit6 PE=1 SV=2
trembl
ID A0A067JLL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05282 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05760: 1151-1301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119494_010 0.0 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
2 Hb_003253_050 0.0917661363 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
3 Hb_002005_100 0.0926497892 - - -
4 Hb_002400_410 0.0977822262 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
5 Hb_008147_070 0.1011422125 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
6 Hb_014894_010 0.1033266389 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
7 Hb_001214_090 0.1097823796 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
8 Hb_008864_090 0.1136661576 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
9 Hb_109002_020 0.1212863082 - - PREDICTED: CTP synthase-like [Jatropha curcas]
10 Hb_002391_210 0.1226578699 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
11 Hb_119530_010 0.123205114 - - -
12 Hb_002889_030 0.1233366292 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
13 Hb_002471_290 0.1234000571 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
14 Hb_077562_030 0.1240909962 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
15 Hb_016522_010 0.1250091629 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
16 Hb_019053_030 0.1263705897 - - PREDICTED: sulfite oxidase [Jatropha curcas]
17 Hb_003906_170 0.1266575466 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_001246_030 0.1270029235 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
19 Hb_004586_350 0.1304781784 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
20 Hb_000103_270 0.1304815532 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_119494_010 Hb_119494_010 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_002005_100 Hb_002005_100 Hb_119494_010--Hb_002005_100 Hb_002400_410 Hb_002400_410 Hb_119494_010--Hb_002400_410 Hb_008147_070 Hb_008147_070 Hb_119494_010--Hb_008147_070 Hb_014894_010 Hb_014894_010 Hb_119494_010--Hb_014894_010 Hb_001214_090 Hb_001214_090 Hb_119494_010--Hb_001214_090 Hb_003253_050--Hb_002400_410 Hb_002391_210 Hb_002391_210 Hb_003253_050--Hb_002391_210 Hb_033501_010 Hb_033501_010 Hb_003253_050--Hb_033501_010 Hb_119530_010 Hb_119530_010 Hb_003253_050--Hb_119530_010 Hb_002889_030 Hb_002889_030 Hb_003253_050--Hb_002889_030 Hb_000190_090 Hb_000190_090 Hb_002005_100--Hb_000190_090 Hb_019053_030 Hb_019053_030 Hb_002005_100--Hb_019053_030 Hb_004411_060 Hb_004411_060 Hb_002005_100--Hb_004411_060 Hb_002005_100--Hb_001214_090 Hb_016522_010 Hb_016522_010 Hb_002005_100--Hb_016522_010 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_002400_410--Hb_119530_010 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_001021_080 Hb_001021_080 Hb_008147_070--Hb_001021_080 Hb_077562_030 Hb_077562_030 Hb_008147_070--Hb_077562_030 Hb_109002_020 Hb_109002_020 Hb_008147_070--Hb_109002_020 Hb_008147_070--Hb_002400_410 Hb_172632_110 Hb_172632_110 Hb_008147_070--Hb_172632_110 Hb_001246_030 Hb_001246_030 Hb_014894_010--Hb_001246_030 Hb_014894_010--Hb_002005_100 Hb_001258_060 Hb_001258_060 Hb_014894_010--Hb_001258_060 Hb_004079_080 Hb_004079_080 Hb_014894_010--Hb_004079_080 Hb_008864_090 Hb_008864_090 Hb_014894_010--Hb_008864_090 Hb_001623_160 Hb_001623_160 Hb_001214_090--Hb_001623_160 Hb_001214_090--Hb_016522_010 Hb_010863_010 Hb_010863_010 Hb_001214_090--Hb_010863_010 Hb_001214_090--Hb_000190_090 Hb_003266_100 Hb_003266_100 Hb_001214_090--Hb_003266_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.642432 1.045 0.484755 0.874403 0.588131 0.795864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3879 1.04784 0.959499 3.27182 0.888287

CAGE analysis