Hb_119530_010

Information

Type -
Description -
Location Contig119530: 9371-13585
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05890: 10954-11418 , PASA_asmbl_05891: 12173-12624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119530_010 0.0 - - -
2 Hb_002400_410 0.0776953782 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
3 Hb_000920_300 0.0782997203 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
4 Hb_007416_120 0.0790391596 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
5 Hb_007747_080 0.0835290314 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000504_070 0.0838281733 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
7 Hb_001268_410 0.0897026849 transcription factor TF Family: TCP PREDICTED: transcription factor TCP20 [Jatropha curcas]
8 Hb_004781_010 0.0912801121 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
9 Hb_011674_020 0.0957113531 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
10 Hb_002213_020 0.0962945342 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
11 Hb_000984_170 0.0963395724 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
12 Hb_002391_210 0.0964541058 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
13 Hb_005663_110 0.0967254476 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
14 Hb_000981_030 0.0977087547 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
15 Hb_010775_040 0.098315317 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
16 Hb_004324_130 0.0985547254 - - polypyrimidine tract binding protein, putative [Ricinus communis]
17 Hb_001999_310 0.0987633584 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
18 Hb_001019_050 0.0990074799 - - PREDICTED: importin-13 [Jatropha curcas]
19 Hb_001876_050 0.0990747991 - - hypothetical protein JCGZ_01286 [Jatropha curcas]
20 Hb_002456_010 0.0995951492 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_119530_010 Hb_119530_010 Hb_002400_410 Hb_002400_410 Hb_119530_010--Hb_002400_410 Hb_000920_300 Hb_000920_300 Hb_119530_010--Hb_000920_300 Hb_007416_120 Hb_007416_120 Hb_119530_010--Hb_007416_120 Hb_007747_080 Hb_007747_080 Hb_119530_010--Hb_007747_080 Hb_000504_070 Hb_000504_070 Hb_119530_010--Hb_000504_070 Hb_001268_410 Hb_001268_410 Hb_119530_010--Hb_001268_410 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_003913_070 Hb_003913_070 Hb_000920_300--Hb_003913_070 Hb_002456_010 Hb_002456_010 Hb_000920_300--Hb_002456_010 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_004934_050 Hb_004934_050 Hb_000920_300--Hb_004934_050 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100 Hb_007416_120--Hb_001671_100 Hb_001876_050 Hb_001876_050 Hb_007416_120--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_007416_120--Hb_004324_130 Hb_001999_310 Hb_001999_310 Hb_007416_120--Hb_001999_310 Hb_007416_120--Hb_000181_400 Hb_000111_290 Hb_000111_290 Hb_007416_120--Hb_000111_290 Hb_005396_150 Hb_005396_150 Hb_007747_080--Hb_005396_150 Hb_003544_030 Hb_003544_030 Hb_007747_080--Hb_003544_030 Hb_001157_200 Hb_001157_200 Hb_007747_080--Hb_001157_200 Hb_000984_170 Hb_000984_170 Hb_007747_080--Hb_000984_170 Hb_112198_010 Hb_112198_010 Hb_007747_080--Hb_112198_010 Hb_028227_070 Hb_028227_070 Hb_000504_070--Hb_028227_070 Hb_000504_070--Hb_007416_120 Hb_002534_120 Hb_002534_120 Hb_000504_070--Hb_002534_120 Hb_006452_100 Hb_006452_100 Hb_000504_070--Hb_006452_100 Hb_005914_170 Hb_005914_170 Hb_000504_070--Hb_005914_170 Hb_000175_540 Hb_000175_540 Hb_000504_070--Hb_000175_540 Hb_029584_050 Hb_029584_050 Hb_001268_410--Hb_029584_050 Hb_001268_410--Hb_002400_410 Hb_000327_180 Hb_000327_180 Hb_001268_410--Hb_000327_180 Hb_001268_410--Hb_005396_150 Hb_000917_230 Hb_000917_230 Hb_001268_410--Hb_000917_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.902149 1.95803 0.924993 1.81692 0.743871 1.73885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79036 1.66506 1.18543 3.07657 1.5503

CAGE analysis