Hb_119583_010

Information

Type -
Description -
Location Contig119583: 12179-12679
Sequence    

Annotation

kegg
ID rcu:RCOM_0153900
description 60S ribosomal protein L12, putative
nr
ID ADR71265.1
description 60S ribosomal protein L12A [Hevea brasiliensis]
swissprot
ID O50003
description 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1
trembl
ID I3NMM8
description 60S ribosomal protein L12A OS=Hevea brasiliensis GN=RPL12A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05893: 11931-12713
cDNA
(Sanger)
(ID:Location)		 007_C15.ab1: 12059-12713

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119583_010 0.0 - - 60S ribosomal protein L12A [Hevea brasiliensis]
2 Hb_007632_250 0.0768853459 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003633_130 0.0798799365 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
4 Hb_003106_130 0.0827563534 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
5 Hb_004502_030 0.0843313347 - - unknown [Populus trichocarpa]
6 Hb_000847_070 0.0899311038 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
7 Hb_002997_170 0.0918586144 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
8 Hb_001221_230 0.0950643836 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000189_530 0.0956145993 - - 40S ribosomal protein S24B [Hevea brasiliensis]
10 Hb_003911_040 0.0963385729 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
11 Hb_000035_380 0.0974472167 - - -
12 Hb_005735_030 0.0975039144 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000317_430 0.0985117628 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
14 Hb_004204_200 0.0999633469 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
15 Hb_134226_010 0.1011928708 - - 40S ribosomal protein S21e, putative [Ricinus communis]
16 Hb_006637_060 0.1012125125 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
17 Hb_000617_320 0.1014666503 - - 40S ribosomal protein S21B [Hevea brasiliensis]
18 Hb_052135_030 0.1023643264 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
19 Hb_007992_030 0.1045519819 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
20 Hb_000045_130 0.1055760214 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]

Gene co-expression network

sample Hb_119583_010 Hb_119583_010 Hb_007632_250 Hb_007632_250 Hb_119583_010--Hb_007632_250 Hb_003633_130 Hb_003633_130 Hb_119583_010--Hb_003633_130 Hb_003106_130 Hb_003106_130 Hb_119583_010--Hb_003106_130 Hb_004502_030 Hb_004502_030 Hb_119583_010--Hb_004502_030 Hb_000847_070 Hb_000847_070 Hb_119583_010--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_119583_010--Hb_002997_170 Hb_000617_320 Hb_000617_320 Hb_007632_250--Hb_000617_320 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_003633_130--Hb_004502_030 Hb_002942_070 Hb_002942_070 Hb_003633_130--Hb_002942_070 Hb_007992_030 Hb_007992_030 Hb_003633_130--Hb_007992_030 Hb_003633_130--Hb_007632_250 Hb_003633_130--Hb_000847_070 Hb_003120_060 Hb_003120_060 Hb_003106_130--Hb_003120_060 Hb_001246_100 Hb_001246_100 Hb_003106_130--Hb_001246_100 Hb_002942_020 Hb_002942_020 Hb_003106_130--Hb_002942_020 Hb_000019_230 Hb_000019_230 Hb_003106_130--Hb_000019_230 Hb_002235_150 Hb_002235_150 Hb_003106_130--Hb_002235_150 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_000847_070--Hb_004096_170 Hb_000847_070--Hb_001514_020 Hb_000847_070--Hb_007992_030 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_000905_190 Hb_000905_190 Hb_002997_170--Hb_000905_190 Hb_001741_140 Hb_001741_140 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
701.126 148.528 151.298 124.187 801.612 1214.08
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
558.237 846.011 332.896 194.862 56.8053

CAGE analysis