Hb_119583_030

Information

Type -
Description -
Location Contig119583: 26488-30042
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G084100g
description hypothetical protein
nr
ID CBI24270.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7T190
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g02760 PE=4 SV=1
Gene Ontology
ID GO:0016021
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05895: 29677-29873
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119583_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000025_800 0.0275981278 - - hypothetical protein VITISV_020143 [Vitis vinifera]
3 Hb_057721_010 0.0421510069 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_010252_010 0.046571724 - - -
5 Hb_002163_070 0.0503653281 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
6 Hb_185437_010 0.065969998 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
7 Hb_000483_120 0.0725775876 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
8 Hb_001518_050 0.0727627922 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_177179_020 0.0729219966 - - conserved hypothetical protein [Ricinus communis]
10 Hb_137862_020 0.0733481743 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
11 Hb_009083_020 0.0758164201 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
12 Hb_149194_010 0.0832941511 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
13 Hb_160950_010 0.0837265043 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
14 Hb_039440_010 0.0897603484 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000908_030 0.0964475288 - - small heat-shock protein, putative [Ricinus communis]
16 Hb_179367_020 0.0998490105 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_023712_020 0.1013370785 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
18 Hb_000248_080 0.1072357749 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
19 Hb_000170_260 0.1113746407 - - amino acid transporter, putative [Ricinus communis]
20 Hb_011826_010 0.1214168211 - - Disease resistance protein RPM1, putative [Ricinus communis]

Gene co-expression network

sample Hb_119583_030 Hb_119583_030 Hb_000025_800 Hb_000025_800 Hb_119583_030--Hb_000025_800 Hb_057721_010 Hb_057721_010 Hb_119583_030--Hb_057721_010 Hb_010252_010 Hb_010252_010 Hb_119583_030--Hb_010252_010 Hb_002163_070 Hb_002163_070 Hb_119583_030--Hb_002163_070 Hb_185437_010 Hb_185437_010 Hb_119583_030--Hb_185437_010 Hb_000483_120 Hb_000483_120 Hb_119583_030--Hb_000483_120 Hb_000025_800--Hb_185437_010 Hb_001518_050 Hb_001518_050 Hb_000025_800--Hb_001518_050 Hb_000025_800--Hb_010252_010 Hb_000025_800--Hb_002163_070 Hb_000025_800--Hb_057721_010 Hb_137862_020 Hb_137862_020 Hb_057721_010--Hb_137862_020 Hb_057721_010--Hb_002163_070 Hb_023712_020 Hb_023712_020 Hb_057721_010--Hb_023712_020 Hb_177179_020 Hb_177179_020 Hb_057721_010--Hb_177179_020 Hb_010252_010--Hb_002163_070 Hb_009083_020 Hb_009083_020 Hb_010252_010--Hb_009083_020 Hb_160950_010 Hb_160950_010 Hb_010252_010--Hb_160950_010 Hb_010252_010--Hb_185437_010 Hb_002163_070--Hb_009083_020 Hb_002163_070--Hb_137862_020 Hb_002163_070--Hb_160950_010 Hb_000248_080 Hb_000248_080 Hb_002163_070--Hb_000248_080 Hb_185437_010--Hb_001518_050 Hb_039440_010 Hb_039440_010 Hb_185437_010--Hb_039440_010 Hb_185437_010--Hb_160950_010 Hb_000483_120--Hb_177179_020 Hb_000483_120--Hb_057721_010 Hb_000483_120--Hb_000025_800 Hb_179367_020 Hb_179367_020 Hb_000483_120--Hb_179367_020 Hb_003489_010 Hb_003489_010 Hb_000483_120--Hb_003489_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0478689 0.130227 0.177203 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis