Hb_119600_040

Information

Type -
Description -
Location Contig119600: 33589-36057
Sequence    

Annotation

kegg
ID rcu:RCOM_1601950
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP36754.1
description hypothetical protein JCGZ_08045 [Jatropha curcas]
swissprot
ID Q9SIT7
description Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
trembl
ID A0A067KY59
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119600_040 0.0 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
2 Hb_000935_050 0.0593356387 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
3 Hb_007075_050 0.0787679418 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_005686_030 0.0897918892 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial-like [Jatropha curcas]
5 Hb_027472_170 0.0909679923 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
6 Hb_000236_140 0.1006501482 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
7 Hb_000297_200 0.1014070978 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
8 Hb_000019_130 0.101804264 - - PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510 [Jatropha curcas]
9 Hb_000574_350 0.1020161626 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_000457_150 0.1031454666 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_004128_180 0.1055286111 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000307_030 0.1061438997 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
13 Hb_000019_060 0.10961476 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
14 Hb_006846_110 0.1128844411 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
15 Hb_004410_100 0.1156250038 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
16 Hb_003687_100 0.1179637158 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
17 Hb_000317_280 0.1193935818 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At5g08490 [Jatropha curcas]
18 Hb_000059_220 0.119638166 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
19 Hb_005147_090 0.1206944523 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
20 Hb_007747_200 0.1215299051 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]

Gene co-expression network

sample Hb_119600_040 Hb_119600_040 Hb_000935_050 Hb_000935_050 Hb_119600_040--Hb_000935_050 Hb_007075_050 Hb_007075_050 Hb_119600_040--Hb_007075_050 Hb_005686_030 Hb_005686_030 Hb_119600_040--Hb_005686_030 Hb_027472_170 Hb_027472_170 Hb_119600_040--Hb_027472_170 Hb_000236_140 Hb_000236_140 Hb_119600_040--Hb_000236_140 Hb_000297_200 Hb_000297_200 Hb_119600_040--Hb_000297_200 Hb_000935_050--Hb_007075_050 Hb_000019_130 Hb_000019_130 Hb_000935_050--Hb_000019_130 Hb_000935_050--Hb_027472_170 Hb_000935_050--Hb_000297_200 Hb_007747_200 Hb_007747_200 Hb_000935_050--Hb_007747_200 Hb_007075_050--Hb_000019_130 Hb_000019_060 Hb_000019_060 Hb_007075_050--Hb_000019_060 Hb_007075_050--Hb_000236_140 Hb_003687_100 Hb_003687_100 Hb_007075_050--Hb_003687_100 Hb_005686_030--Hb_000019_130 Hb_005686_030--Hb_027472_170 Hb_005686_030--Hb_000935_050 Hb_005686_030--Hb_007075_050 Hb_004128_180 Hb_004128_180 Hb_005686_030--Hb_004128_180 Hb_027472_170--Hb_000019_130 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_000007_150 Hb_000007_150 Hb_027472_170--Hb_000007_150 Hb_168319_030 Hb_168319_030 Hb_027472_170--Hb_168319_030 Hb_000236_140--Hb_003687_100 Hb_000236_140--Hb_004128_180 Hb_007416_270 Hb_007416_270 Hb_000236_140--Hb_007416_270 Hb_000479_130 Hb_000479_130 Hb_000236_140--Hb_000479_130 Hb_000172_560 Hb_000172_560 Hb_000236_140--Hb_000172_560 Hb_000997_400 Hb_000997_400 Hb_000297_200--Hb_000997_400 Hb_000457_150 Hb_000457_150 Hb_000297_200--Hb_000457_150 Hb_029584_130 Hb_029584_130 Hb_000297_200--Hb_029584_130 Hb_000297_200--Hb_000007_150 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15437 1.66279 0.54145 0.325104 1.55766 1.63421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.62976 2.67761 5.23749 1.06898 0.41926

CAGE analysis