Hb_119600_050

Information

Type -
Description -
Location Contig119600: 38053-42791
Sequence    

Annotation

kegg
ID rcu:RCOM_1601940
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002510716.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q8LPQ8
description Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=1 SV=2
trembl
ID B9R8S3
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1601940 PE=3 SV=1
Gene Ontology
ID GO:0016021
description monosaccharide-sensing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05916: 38134-42758 , PASA_asmbl_05917: 38487-38592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119600_050 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_003632_030 0.1045349595 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
3 Hb_001411_030 0.1053889815 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
4 Hb_007123_050 0.1068573839 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
5 Hb_000284_230 0.1120779847 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
6 Hb_000608_300 0.1138193021 - - PREDICTED: protein KRI1 homolog [Jatropha curcas]
7 Hb_006355_020 0.1156543586 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
8 Hb_001059_130 0.1157376854 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
9 Hb_158092_080 0.115898797 - - hypothetical protein JCGZ_23092 [Jatropha curcas]
10 Hb_000674_010 0.1165116305 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
11 Hb_000358_100 0.1181879904 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
12 Hb_004306_030 0.1198274976 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
13 Hb_004875_010 0.1218271532 - - plasma membrane aquaporin 1 [Hevea brasiliensis]
14 Hb_000800_110 0.1227160573 - - NAD dehydrogenase, putative [Ricinus communis]
15 Hb_005211_020 0.1229837879 - - PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X1 [Jatropha curcas]
16 Hb_005914_040 0.1233742549 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
17 Hb_000363_300 0.123846325 - - PREDICTED: protein ENHANCED DOWNY MILDEW 2 isoform X1 [Jatropha curcas]
18 Hb_001998_220 0.124056035 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
19 Hb_006846_080 0.1242649766 - - calnexin, putative [Ricinus communis]
20 Hb_000482_150 0.1247450835 - - PREDICTED: zinc transporter 4, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_119600_050 Hb_119600_050 Hb_003632_030 Hb_003632_030 Hb_119600_050--Hb_003632_030 Hb_001411_030 Hb_001411_030 Hb_119600_050--Hb_001411_030 Hb_007123_050 Hb_007123_050 Hb_119600_050--Hb_007123_050 Hb_000284_230 Hb_000284_230 Hb_119600_050--Hb_000284_230 Hb_000608_300 Hb_000608_300 Hb_119600_050--Hb_000608_300 Hb_006355_020 Hb_006355_020 Hb_119600_050--Hb_006355_020 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_004225_040 Hb_004225_040 Hb_001411_030--Hb_004225_040 Hb_001411_030--Hb_022250_100 Hb_005211_020 Hb_005211_020 Hb_001411_030--Hb_005211_020 Hb_003470_070 Hb_003470_070 Hb_001411_030--Hb_003470_070 Hb_001579_200 Hb_001579_200 Hb_001411_030--Hb_001579_200 Hb_158092_080 Hb_158092_080 Hb_007123_050--Hb_158092_080 Hb_004064_050 Hb_004064_050 Hb_007123_050--Hb_004064_050 Hb_000243_130 Hb_000243_130 Hb_007123_050--Hb_000243_130 Hb_000608_230 Hb_000608_230 Hb_007123_050--Hb_000608_230 Hb_044486_040 Hb_044486_040 Hb_007123_050--Hb_044486_040 Hb_003913_110 Hb_003913_110 Hb_007123_050--Hb_003913_110 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_001194_020 Hb_001194_020 Hb_000284_230--Hb_001194_020 Hb_000358_100 Hb_000358_100 Hb_000284_230--Hb_000358_100 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_000284_230--Hb_006355_020 Hb_004306_030 Hb_004306_030 Hb_000608_300--Hb_004306_030 Hb_001789_040 Hb_001789_040 Hb_000608_300--Hb_001789_040 Hb_000568_050 Hb_000568_050 Hb_000608_300--Hb_000568_050 Hb_002600_060 Hb_002600_060 Hb_000608_300--Hb_002600_060 Hb_000608_300--Hb_005211_020 Hb_012055_110 Hb_012055_110 Hb_000608_300--Hb_012055_110 Hb_006355_020--Hb_022250_100 Hb_162275_040 Hb_162275_040 Hb_006355_020--Hb_162275_040 Hb_006355_020--Hb_001194_020 Hb_001059_130 Hb_001059_130 Hb_006355_020--Hb_001059_130 Hb_000086_440 Hb_000086_440 Hb_006355_020--Hb_000086_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.54378 18.2107 8.9212 20.7104 16.863 12.4416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.68179 3.03076 4.50538 20.1926 31.9306

CAGE analysis