Hb_119600_070

Information

Type -
Description -
Location Contig119600: 43734-45785
Sequence    

Annotation

kegg
ID rcu:RCOM_1601920
description hypothetical protein
nr
ID XP_012073599.1
description PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKY3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08048 PE=4 SV=1
Gene Ontology
ID GO:0009941
description multiple chloroplast division site

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05918: 43343-45878 , PASA_asmbl_05919: 44212-45600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119600_070 0.0 - - PREDICTED: uncharacterized protein LOC105635190 [Jatropha curcas]
2 Hb_000066_080 0.0700482179 - - PREDICTED: mRNA cap guanine-N7 methyltransferase 2 isoform X2 [Jatropha curcas]
3 Hb_001711_020 0.0768967615 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
4 Hb_000599_250 0.0794473452 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
5 Hb_000538_070 0.0803519381 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
6 Hb_000046_320 0.0825349983 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_000749_220 0.0837061448 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
8 Hb_004934_100 0.0844543955 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007904_260 0.0854226057 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
10 Hb_003697_040 0.0859320591 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
11 Hb_003177_030 0.0860481799 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]
12 Hb_001390_130 0.0868463836 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
13 Hb_009339_030 0.0872920122 - - PREDICTED: mitogen-activated protein kinase 9-like [Jatropha curcas]
14 Hb_001300_150 0.0901274086 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
15 Hb_004079_030 0.0902276932 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
16 Hb_001489_080 0.090243299 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_000783_020 0.0909264415 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
18 Hb_004889_010 0.0912320076 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
19 Hb_000477_060 0.0915519213 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
20 Hb_024128_020 0.0916730405 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_119600_070 Hb_119600_070 Hb_000066_080 Hb_000066_080 Hb_119600_070--Hb_000066_080 Hb_001711_020 Hb_001711_020 Hb_119600_070--Hb_001711_020 Hb_000599_250 Hb_000599_250 Hb_119600_070--Hb_000599_250 Hb_000538_070 Hb_000538_070 Hb_119600_070--Hb_000538_070 Hb_000046_320 Hb_000046_320 Hb_119600_070--Hb_000046_320 Hb_000749_220 Hb_000749_220 Hb_119600_070--Hb_000749_220 Hb_002620_020 Hb_002620_020 Hb_000066_080--Hb_002620_020 Hb_000003_250 Hb_000003_250 Hb_000066_080--Hb_000003_250 Hb_000783_020 Hb_000783_020 Hb_000066_080--Hb_000783_020 Hb_003697_040 Hb_003697_040 Hb_000066_080--Hb_003697_040 Hb_000066_080--Hb_000749_220 Hb_001711_020--Hb_000599_250 Hb_004934_100 Hb_004934_100 Hb_001711_020--Hb_004934_100 Hb_001300_150 Hb_001300_150 Hb_001711_020--Hb_001300_150 Hb_002600_090 Hb_002600_090 Hb_001711_020--Hb_002600_090 Hb_001971_010 Hb_001971_010 Hb_001711_020--Hb_001971_010 Hb_000375_350 Hb_000375_350 Hb_001711_020--Hb_000375_350 Hb_000599_250--Hb_004934_100 Hb_000599_250--Hb_000375_350 Hb_000599_250--Hb_001300_150 Hb_005496_140 Hb_005496_140 Hb_000599_250--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000599_250--Hb_002641_060 Hb_000096_010 Hb_000096_010 Hb_000538_070--Hb_000096_010 Hb_001390_130 Hb_001390_130 Hb_000538_070--Hb_001390_130 Hb_000291_080 Hb_000291_080 Hb_000538_070--Hb_000291_080 Hb_009339_030 Hb_009339_030 Hb_000538_070--Hb_009339_030 Hb_003540_030 Hb_003540_030 Hb_000538_070--Hb_003540_030 Hb_007904_260 Hb_007904_260 Hb_000046_320--Hb_007904_260 Hb_000985_030 Hb_000985_030 Hb_000046_320--Hb_000985_030 Hb_000777_040 Hb_000777_040 Hb_000046_320--Hb_000777_040 Hb_000046_320--Hb_000749_220 Hb_003177_030 Hb_003177_030 Hb_000046_320--Hb_003177_030 Hb_002998_060 Hb_002998_060 Hb_000046_320--Hb_002998_060 Hb_000749_220--Hb_003177_030 Hb_000172_290 Hb_000172_290 Hb_000749_220--Hb_000172_290 Hb_000477_060 Hb_000477_060 Hb_000749_220--Hb_000477_060 Hb_000749_220--Hb_000003_250 Hb_005490_030 Hb_005490_030 Hb_000749_220--Hb_005490_030 Hb_001159_130 Hb_001159_130 Hb_000749_220--Hb_001159_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9181 6.7029 13.9019 18.0096 10.1212 18.8932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9468 19.5368 31.1845 12.2028 14.5747

CAGE analysis