Hb_119832_010

Information

Type -
Description -
Location Contig119832: 197-923
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_119832_010 0.0 - - -
2 Hb_000311_110 0.0877359876 - - ATP-binding cassette transporter, putative [Ricinus communis]
3 Hb_009393_110 0.1004883573 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
4 Hb_029510_060 0.1062343994 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
5 Hb_004951_030 0.1101540752 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
6 Hb_003440_080 0.1148952401 - - polyprotein [Citrus endogenous pararetrovirus]
7 Hb_003796_010 0.1168624623 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_000951_070 0.1198592428 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
9 Hb_000289_090 0.1267743793 - - -
10 Hb_008225_020 0.1292117292 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
11 Hb_018105_010 0.129440284 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
12 Hb_012796_030 0.1352440588 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
13 Hb_001999_050 0.135487724 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
14 Hb_004643_020 0.1357831536 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
15 Hb_089305_040 0.1555958121 - - -
16 Hb_010402_040 0.1603629014 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
17 Hb_007575_020 0.1604312356 - - cytochrome P450, putative [Ricinus communis]
18 Hb_023738_010 0.1633040338 - - Concanavalin A-like lectin protein kinase family protein [Theobroma cacao]
19 Hb_000574_340 0.1633610945 - - hypothetical protein RCOM_0901420 [Ricinus communis]
20 Hb_004899_210 0.1646272728 - - PREDICTED: respiratory burst oxidase homolog protein E [Jatropha curcas]

Gene co-expression network

sample Hb_119832_010 Hb_119832_010 Hb_000311_110 Hb_000311_110 Hb_119832_010--Hb_000311_110 Hb_009393_110 Hb_009393_110 Hb_119832_010--Hb_009393_110 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_004951_030 Hb_004951_030 Hb_119832_010--Hb_004951_030 Hb_003440_080 Hb_003440_080 Hb_119832_010--Hb_003440_080 Hb_003796_010 Hb_003796_010 Hb_119832_010--Hb_003796_010 Hb_001999_050 Hb_001999_050 Hb_000311_110--Hb_001999_050 Hb_018105_010 Hb_018105_010 Hb_000311_110--Hb_018105_010 Hb_000311_110--Hb_009393_110 Hb_000311_110--Hb_003440_080 Hb_000780_160 Hb_000780_160 Hb_000311_110--Hb_000780_160 Hb_009393_110--Hb_003796_010 Hb_009393_110--Hb_004951_030 Hb_008225_020 Hb_008225_020 Hb_009393_110--Hb_008225_020 Hb_000951_070 Hb_000951_070 Hb_009393_110--Hb_000951_070 Hb_023738_010 Hb_023738_010 Hb_029510_060--Hb_023738_010 Hb_093388_010 Hb_093388_010 Hb_029510_060--Hb_093388_010 Hb_001250_030 Hb_001250_030 Hb_029510_060--Hb_001250_030 Hb_029510_060--Hb_000951_070 Hb_029510_060--Hb_003796_010 Hb_004951_030--Hb_003796_010 Hb_004643_020 Hb_004643_020 Hb_004951_030--Hb_004643_020 Hb_004951_030--Hb_018105_010 Hb_004951_030--Hb_008225_020 Hb_000574_340 Hb_000574_340 Hb_003440_080--Hb_000574_340 Hb_012796_030 Hb_012796_030 Hb_003440_080--Hb_012796_030 Hb_000289_090 Hb_000289_090 Hb_003440_080--Hb_000289_090 Hb_003440_080--Hb_000951_070 Hb_027337_130 Hb_027337_130 Hb_003440_080--Hb_027337_130 Hb_089305_040 Hb_089305_040 Hb_003796_010--Hb_089305_040 Hb_003796_010--Hb_004643_020 Hb_003796_010--Hb_000951_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.706396 0.211182 0.170299 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0519351 1.80752

CAGE analysis