Hb_120112_010

Information

Type -
Description -
Location Contig120112: 22-555
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120112_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_008689_020 0.0033867708 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000976_370 0.004157418 - - beta-glucosidase, putative [Ricinus communis]
4 Hb_106496_010 0.195238571 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
5 Hb_008221_120 0.2454087652 - - PREDICTED: GDSL esterase/lipase At5g63170-like [Jatropha curcas]
6 Hb_005305_190 0.2500936543 transcription factor TF Family: NAC -
7 Hb_001934_020 0.2993509257 - - PREDICTED: uncharacterized protein LOC105178413 [Sesamum indicum]
8 Hb_000445_240 0.3142707016 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015836_010 0.3275682963 - - -
10 Hb_017214_050 0.3319412698 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
11 Hb_002027_370 0.3335769549 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005952_020 0.3351299543 - - -
13 Hb_005779_070 0.3363095187 - - -
14 Hb_010589_100 0.3383315094 - - Thioredoxin domain-containing protein 9-like protein [Morus notabilis]
15 Hb_003687_180 0.3561573889 - - hypothetical protein JCGZ_02335 [Jatropha curcas]
16 Hb_074683_010 0.3562122603 - - -
17 Hb_029142_080 0.3622503218 - - Ankyrin repeat family protein, putative [Theobroma cacao]
18 Hb_151978_010 0.3629769586 - - -
19 Hb_032533_010 0.3644856003 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
20 Hb_114146_010 0.3771783532 - - hypothetical protein JCGZ_15608 [Jatropha curcas]

Gene co-expression network

sample Hb_120112_010 Hb_120112_010 Hb_008689_020 Hb_008689_020 Hb_120112_010--Hb_008689_020 Hb_000976_370 Hb_000976_370 Hb_120112_010--Hb_000976_370 Hb_106496_010 Hb_106496_010 Hb_120112_010--Hb_106496_010 Hb_008221_120 Hb_008221_120 Hb_120112_010--Hb_008221_120 Hb_005305_190 Hb_005305_190 Hb_120112_010--Hb_005305_190 Hb_001934_020 Hb_001934_020 Hb_120112_010--Hb_001934_020 Hb_008689_020--Hb_000976_370 Hb_008689_020--Hb_106496_010 Hb_008689_020--Hb_008221_120 Hb_008689_020--Hb_005305_190 Hb_008689_020--Hb_001934_020 Hb_000976_370--Hb_106496_010 Hb_000976_370--Hb_008221_120 Hb_000976_370--Hb_005305_190 Hb_000976_370--Hb_001934_020 Hb_106496_010--Hb_001934_020 Hb_106496_010--Hb_008221_120 Hb_106496_010--Hb_005305_190 Hb_008221_120--Hb_005305_190 Hb_005952_020 Hb_005952_020 Hb_008221_120--Hb_005952_020 Hb_005779_070 Hb_005779_070 Hb_008221_120--Hb_005779_070 Hb_010589_100 Hb_010589_100 Hb_008221_120--Hb_010589_100 Hb_005305_190--Hb_005779_070 Hb_005305_190--Hb_005952_020 Hb_005305_190--Hb_010589_100 Hb_000445_240 Hb_000445_240 Hb_005305_190--Hb_000445_240 Hb_007140_010 Hb_007140_010 Hb_005305_190--Hb_007140_010 Hb_001934_020--Hb_008221_120 Hb_001934_020--Hb_010589_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517315 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0948509 0 0 0

CAGE analysis