Hb_120221_010

Information

Type -
Description -
Location Contig120221: 59-695
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120221_010 0.0 - - -
2 Hb_000995_050 0.106923698 - - 40S ribosomal protein S17C [Hevea brasiliensis]
3 Hb_011016_090 0.1309034742 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
4 Hb_002821_010 0.1370244654 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
5 Hb_002259_030 0.1373178674 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000381_080 0.137856086 transcription factor TF Family: SNF2 PREDICTED: DNA repair protein RAD16 [Jatropha curcas]
7 Hb_001976_050 0.1384088883 - - PREDICTED: protein SKIP34 [Jatropha curcas]
8 Hb_143947_010 0.1414342695 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
9 Hb_003746_060 0.145400086 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
10 Hb_102156_010 0.1468594061 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000453_260 0.1489174679 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
12 Hb_004117_180 0.1490152696 - - -
13 Hb_000175_400 0.151718254 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000032_540 0.1530645152 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
15 Hb_001057_050 0.1568716743 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
16 Hb_000442_100 0.1587533898 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
17 Hb_003398_060 0.1597499707 - - PREDICTED: rRNA methyltransferase 2, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000193_350 0.1627471124 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
19 Hb_034585_030 0.1661093144 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
20 Hb_001818_080 0.1675339016 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_120221_010 Hb_120221_010 Hb_000995_050 Hb_000995_050 Hb_120221_010--Hb_000995_050 Hb_011016_090 Hb_011016_090 Hb_120221_010--Hb_011016_090 Hb_002821_010 Hb_002821_010 Hb_120221_010--Hb_002821_010 Hb_002259_030 Hb_002259_030 Hb_120221_010--Hb_002259_030 Hb_000381_080 Hb_000381_080 Hb_120221_010--Hb_000381_080 Hb_001976_050 Hb_001976_050 Hb_120221_010--Hb_001976_050 Hb_000453_260 Hb_000453_260 Hb_000995_050--Hb_000453_260 Hb_000156_130 Hb_000156_130 Hb_000995_050--Hb_000156_130 Hb_000995_050--Hb_002259_030 Hb_000510_090 Hb_000510_090 Hb_000995_050--Hb_000510_090 Hb_005916_030 Hb_005916_030 Hb_000995_050--Hb_005916_030 Hb_000189_530 Hb_000189_530 Hb_011016_090--Hb_000189_530 Hb_000175_400 Hb_000175_400 Hb_011016_090--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_011016_090--Hb_000193_350 Hb_011016_090--Hb_002259_030 Hb_004453_150 Hb_004453_150 Hb_011016_090--Hb_004453_150 Hb_000032_540 Hb_000032_540 Hb_011016_090--Hb_000032_540 Hb_002821_010--Hb_000381_080 Hb_084934_010 Hb_084934_010 Hb_002821_010--Hb_084934_010 Hb_027472_090 Hb_027472_090 Hb_002821_010--Hb_027472_090 Hb_170305_020 Hb_170305_020 Hb_002821_010--Hb_170305_020 Hb_000366_100 Hb_000366_100 Hb_002821_010--Hb_000366_100 Hb_002259_030--Hb_000032_540 Hb_002259_030--Hb_000175_400 Hb_002259_030--Hb_004453_150 Hb_002259_030--Hb_000156_130 Hb_001454_140 Hb_001454_140 Hb_002259_030--Hb_001454_140 Hb_000442_100 Hb_000442_100 Hb_000381_080--Hb_000442_100 Hb_000381_080--Hb_000995_050 Hb_000381_080--Hb_084934_010 Hb_000381_080--Hb_000156_130 Hb_155375_010 Hb_155375_010 Hb_001976_050--Hb_155375_010 Hb_001976_050--Hb_000032_540 Hb_143947_010 Hb_143947_010 Hb_001976_050--Hb_143947_010 Hb_001976_050--Hb_000510_090 Hb_000705_220 Hb_000705_220 Hb_001976_050--Hb_000705_220 Hb_001976_050--Hb_002259_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.089 62.452 3.81545 26.073 81.1972 342.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
171.778 156.744 52.2069 35.5416 1.36911

CAGE analysis