Hb_120268_010

Information

Type -
Description -
Location Contig120268: 959-1906
Sequence    

Annotation

kegg
ID tcc:TCM_002139
description Chitin elicitor receptor kinase 1, RLK1 isoform 1
nr
ID XP_011007198.1
description PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
swissprot
ID -
description -
trembl
ID M0ZJ43
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402000674 PE=4 SV=1
Gene Ontology
ID GO:0016301
description chitin elicitor receptor kinase rlk1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120268_010 0.0 - - PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
2 Hb_000203_060 0.0972758537 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
3 Hb_004162_040 0.1170416308 - - PREDICTED: lysosomal Pro-X carboxypeptidase-like [Crassostrea gigas]
4 Hb_148121_030 0.1325379223 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
5 Hb_001709_070 0.1481964736 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_001769_030 0.1491855173 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
7 Hb_124385_010 0.157308757 - - hypothetical protein JCGZ_13882 [Jatropha curcas]
8 Hb_011174_100 0.162954567 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_079158_010 0.1655252753 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
10 Hb_001623_470 0.1670174324 - - ammonium transporter, putative [Ricinus communis]
11 Hb_152718_010 0.1710164264 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
12 Hb_004021_120 0.1711579859 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
13 Hb_000221_170 0.1773250044 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
14 Hb_000512_040 0.179208226 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_001454_160 0.1836905465 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
16 Hb_000876_050 0.1850332427 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
17 Hb_003878_100 0.1885806691 desease resistance Gene Name: NB-ARC LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
18 Hb_005542_110 0.1906268669 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
19 Hb_000976_060 0.1922245035 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_005333_100 0.1933477568 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_120268_010 Hb_120268_010 Hb_000203_060 Hb_000203_060 Hb_120268_010--Hb_000203_060 Hb_004162_040 Hb_004162_040 Hb_120268_010--Hb_004162_040 Hb_148121_030 Hb_148121_030 Hb_120268_010--Hb_148121_030 Hb_001709_070 Hb_001709_070 Hb_120268_010--Hb_001709_070 Hb_001769_030 Hb_001769_030 Hb_120268_010--Hb_001769_030 Hb_124385_010 Hb_124385_010 Hb_120268_010--Hb_124385_010 Hb_000203_060--Hb_004162_040 Hb_000203_060--Hb_148121_030 Hb_000203_060--Hb_001709_070 Hb_001623_470 Hb_001623_470 Hb_000203_060--Hb_001623_470 Hb_000203_060--Hb_001769_030 Hb_004162_040--Hb_001709_070 Hb_004162_040--Hb_124385_010 Hb_008503_020 Hb_008503_020 Hb_004162_040--Hb_008503_020 Hb_000221_170 Hb_000221_170 Hb_004162_040--Hb_000221_170 Hb_040963_010 Hb_040963_010 Hb_148121_030--Hb_040963_010 Hb_001388_020 Hb_001388_020 Hb_148121_030--Hb_001388_020 Hb_005618_110 Hb_005618_110 Hb_148121_030--Hb_005618_110 Hb_002740_170 Hb_002740_170 Hb_148121_030--Hb_002740_170 Hb_001709_070--Hb_124385_010 Hb_001709_070--Hb_008503_020 Hb_001709_070--Hb_000221_170 Hb_029508_030 Hb_029508_030 Hb_001709_070--Hb_029508_030 Hb_001709_070--Hb_001623_470 Hb_001769_030--Hb_001623_470 Hb_000489_020 Hb_000489_020 Hb_001769_030--Hb_000489_020 Hb_152718_010 Hb_152718_010 Hb_001769_030--Hb_152718_010 Hb_005333_100 Hb_005333_100 Hb_001769_030--Hb_005333_100 Hb_001355_110 Hb_001355_110 Hb_001769_030--Hb_001355_110 Hb_001856_060 Hb_001856_060 Hb_124385_010--Hb_001856_060 Hb_001013_040 Hb_001013_040 Hb_124385_010--Hb_001013_040 Hb_124385_010--Hb_029508_030 Hb_124385_010--Hb_008503_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.829724 0.137366 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.683564 0.20346

CAGE analysis