Hb_120384_010

Information

Type -
Description -
Location Contig120384: 56-445
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120384_010 0.0 - - -
2 Hb_003647_010 0.1929760022 - - hypothetical protein JCGZ_25097 [Jatropha curcas]
3 Hb_001584_220 0.2449996283 - - galactinol synthase [Manihot esculenta]
4 Hb_001141_460 0.2477208763 - - PREDICTED: heat shock 70 kDa protein 8 [Jatropha curcas]
5 Hb_000365_060 0.2491560697 - - 5'->3' exoribonuclease, putative [Ricinus communis]
6 Hb_010997_100 0.2496221532 transcription factor TF Family: mTERF -
7 Hb_005843_040 0.2496222703 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
8 Hb_006316_070 0.252532059 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
9 Hb_000260_090 0.2526992282 - - PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
10 Hb_031089_030 0.2532408214 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
11 Hb_002609_010 0.2532656428 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
12 Hb_003299_080 0.2553822421 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
13 Hb_148209_020 0.2566756249 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
14 Hb_001999_280 0.2575343852 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_007257_050 0.2603116884 - - protein with unknown function [Ricinus communis]
16 Hb_012395_160 0.262556792 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
17 Hb_002073_040 0.262562947 - - conserved hypothetical protein [Ricinus communis]
18 Hb_144824_010 0.2629176165 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
19 Hb_000413_170 0.2652731007 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
20 Hb_161072_030 0.2657410566 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Jatropha curcas]

Gene co-expression network

sample Hb_120384_010 Hb_120384_010 Hb_003647_010 Hb_003647_010 Hb_120384_010--Hb_003647_010 Hb_001584_220 Hb_001584_220 Hb_120384_010--Hb_001584_220 Hb_001141_460 Hb_001141_460 Hb_120384_010--Hb_001141_460 Hb_000365_060 Hb_000365_060 Hb_120384_010--Hb_000365_060 Hb_010997_100 Hb_010997_100 Hb_120384_010--Hb_010997_100 Hb_005843_040 Hb_005843_040 Hb_120384_010--Hb_005843_040 Hb_028795_010 Hb_028795_010 Hb_003647_010--Hb_028795_010 Hb_001301_230 Hb_001301_230 Hb_003647_010--Hb_001301_230 Hb_000808_070 Hb_000808_070 Hb_003647_010--Hb_000808_070 Hb_003633_140 Hb_003633_140 Hb_003647_010--Hb_003633_140 Hb_002073_040 Hb_002073_040 Hb_003647_010--Hb_002073_040 Hb_003849_260 Hb_003849_260 Hb_001584_220--Hb_003849_260 Hb_001584_220--Hb_003633_140 Hb_001999_250 Hb_001999_250 Hb_001584_220--Hb_001999_250 Hb_001584_220--Hb_028795_010 Hb_012226_010 Hb_012226_010 Hb_001584_220--Hb_012226_010 Hb_001141_360 Hb_001141_360 Hb_001584_220--Hb_001141_360 Hb_011798_040 Hb_011798_040 Hb_001141_460--Hb_011798_040 Hb_001141_460--Hb_005843_040 Hb_000465_480 Hb_000465_480 Hb_001141_460--Hb_000465_480 Hb_003236_010 Hb_003236_010 Hb_001141_460--Hb_003236_010 Hb_000080_170 Hb_000080_170 Hb_001141_460--Hb_000080_170 Hb_027073_060 Hb_027073_060 Hb_001141_460--Hb_027073_060 Hb_000365_060--Hb_005843_040 Hb_002105_080 Hb_002105_080 Hb_000365_060--Hb_002105_080 Hb_007904_180 Hb_007904_180 Hb_000365_060--Hb_007904_180 Hb_007348_030 Hb_007348_030 Hb_000365_060--Hb_007348_030 Hb_013753_010 Hb_013753_010 Hb_000365_060--Hb_013753_010 Hb_003866_020 Hb_003866_020 Hb_000365_060--Hb_003866_020 Hb_005715_020 Hb_005715_020 Hb_010997_100--Hb_005715_020 Hb_000032_530 Hb_000032_530 Hb_010997_100--Hb_000032_530 Hb_000062_500 Hb_000062_500 Hb_010997_100--Hb_000062_500 Hb_010997_100--Hb_003647_010 Hb_032018_010 Hb_032018_010 Hb_010997_100--Hb_032018_010 Hb_005843_040--Hb_002105_080 Hb_009421_030 Hb_009421_030 Hb_005843_040--Hb_009421_030 Hb_005843_040--Hb_007904_180 Hb_000108_080 Hb_000108_080 Hb_005843_040--Hb_000108_080 Hb_000640_200 Hb_000640_200 Hb_005843_040--Hb_000640_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.544675 1.86246 0 0 0.926819 1.53523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.23005 0.361466 0.282335 0.0787149 0.309385

CAGE analysis