Hb_120410_010

Information

Type -
Description -
Location Contig120410: 11667-13305
Sequence    

Annotation

kegg
ID sot:102582814
description vesicle-associated membrane protein 727-like
nr
ID XP_006361486.1
description PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
swissprot
ID Q9M376
description Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1
trembl
ID M1C7Q3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023968 PE=4 SV=1
Gene Ontology
ID GO:0005768
description vesicle-associated membrane protein 727

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_N22.ab1: 11793-13267 , 009_H05.ab1: 11793-13267 , 023_F05.ab1: 11793-13267 , 026_C05.ab1: 11807-13268 , 029_I18.ab1: 12018-13267 , 033_L22.ab1: 11793-13267

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120410_010 0.0 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
2 Hb_008453_140 0.0402273471 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
3 Hb_004116_060 0.0509420259 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
4 Hb_001142_030 0.0542842692 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
5 Hb_002530_030 0.0546227961 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
6 Hb_002740_030 0.0580720467 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
7 Hb_010381_090 0.0608068492 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
8 Hb_003125_120 0.0616234483 - - PREDICTED: TITAN-like protein [Jatropha curcas]
9 Hb_000220_010 0.0616549261 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
10 Hb_004310_150 0.0629894695 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
11 Hb_000093_160 0.0643263841 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
12 Hb_001163_050 0.066237879 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
13 Hb_001635_180 0.0681003432 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
14 Hb_000959_210 0.0688166346 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
15 Hb_000866_410 0.0689054627 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
16 Hb_004093_090 0.0702865906 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
17 Hb_010068_040 0.0709758007 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]
18 Hb_014720_120 0.0716778994 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]
19 Hb_000563_320 0.072107238 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
20 Hb_007416_300 0.0721622071 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]

Gene co-expression network

sample Hb_120410_010 Hb_120410_010 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_001142_030 Hb_001142_030 Hb_120410_010--Hb_001142_030 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_008453_140--Hb_010381_090 Hb_003125_120 Hb_003125_120 Hb_008453_140--Hb_003125_120 Hb_008453_140--Hb_001142_030 Hb_002872_030 Hb_002872_030 Hb_008453_140--Hb_002872_030 Hb_000220_010 Hb_000220_010 Hb_008453_140--Hb_000220_010 Hb_005588_030 Hb_005588_030 Hb_004116_060--Hb_005588_030 Hb_004116_060--Hb_002530_030 Hb_000093_160 Hb_000093_160 Hb_004116_060--Hb_000093_160 Hb_004096_090 Hb_004096_090 Hb_004116_060--Hb_004096_090 Hb_004116_060--Hb_001142_030 Hb_001142_030--Hb_002740_030 Hb_001142_030--Hb_003125_120 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_000317_240 Hb_000317_240 Hb_002530_030--Hb_000317_240 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010 Hb_000416_040 Hb_000416_040 Hb_002740_030--Hb_000416_040 Hb_002740_030--Hb_000220_010 Hb_002740_030--Hb_008453_140 Hb_002740_030--Hb_001163_050 Hb_007416_300 Hb_007416_300 Hb_010381_090--Hb_007416_300 Hb_010381_090--Hb_002872_030 Hb_010381_090--Hb_001142_030 Hb_003549_150 Hb_003549_150 Hb_010381_090--Hb_003549_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9214 32.8942 42.4017 32.9179 50.3138 48.3722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5775 57.8986 33.255 26.752 25.9657

CAGE analysis