Hb_120470_010

Information

Type -
Description -
Location Contig120470: 4623-6998
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00320g
description hypothetical protein
nr
ID XP_012068542.1
description PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24458 PE=4 SV=1
Gene Ontology
ID GO:0005634
description pax3- and pax7-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120470_010 0.0 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
2 Hb_000526_060 0.0692040619 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
3 Hb_000117_070 0.07514026 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
4 Hb_011791_020 0.0876238047 - - hypothetical protein Csa_6G486930 [Cucumis sativus]
5 Hb_007818_030 0.0881254126 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
6 Hb_002687_090 0.090716649 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
7 Hb_004032_040 0.0933939128 - - unknown [Medicago truncatula]
8 Hb_000896_060 0.0939737591 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000949_010 0.0958305746 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
10 Hb_000703_130 0.099456579 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
11 Hb_008948_160 0.0994651852 - - PREDICTED: uncharacterized protein LOC104214688 isoform X2 [Nicotiana sylvestris]
12 Hb_012368_100 0.0996894827 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
13 Hb_002095_070 0.1045679815 - - PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA helicase [Jatropha curcas]
14 Hb_011202_030 0.104781008 - - arsenite-resistance protein, putative [Ricinus communis]
15 Hb_007576_210 0.1056625128 - - PREDICTED: protein furry homolog [Jatropha curcas]
16 Hb_044486_040 0.1069249462 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
17 Hb_005214_150 0.1097870654 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
18 Hb_009674_080 0.1099168674 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
19 Hb_155159_010 0.1100682806 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
20 Hb_005765_040 0.1104088769 - - transcription elongation factor s-II, putative [Ricinus communis]

Gene co-expression network

sample Hb_120470_010 Hb_120470_010 Hb_000526_060 Hb_000526_060 Hb_120470_010--Hb_000526_060 Hb_000117_070 Hb_000117_070 Hb_120470_010--Hb_000117_070 Hb_011791_020 Hb_011791_020 Hb_120470_010--Hb_011791_020 Hb_007818_030 Hb_007818_030 Hb_120470_010--Hb_007818_030 Hb_002687_090 Hb_002687_090 Hb_120470_010--Hb_002687_090 Hb_004032_040 Hb_004032_040 Hb_120470_010--Hb_004032_040 Hb_000896_060 Hb_000896_060 Hb_000526_060--Hb_000896_060 Hb_000526_060--Hb_000117_070 Hb_000526_060--Hb_007818_030 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000703_130 Hb_000703_130 Hb_000526_060--Hb_000703_130 Hb_000117_070--Hb_000896_060 Hb_012368_100 Hb_012368_100 Hb_000117_070--Hb_012368_100 Hb_044653_020 Hb_044653_020 Hb_000117_070--Hb_044653_020 Hb_000117_070--Hb_000703_130 Hb_143986_010 Hb_143986_010 Hb_011791_020--Hb_143986_010 Hb_011791_020--Hb_000526_060 Hb_000123_350 Hb_000123_350 Hb_011791_020--Hb_000123_350 Hb_011791_020--Hb_000117_070 Hb_011791_020--Hb_004032_040 Hb_007426_060 Hb_007426_060 Hb_007818_030--Hb_007426_060 Hb_007818_030--Hb_000703_130 Hb_001673_050 Hb_001673_050 Hb_007818_030--Hb_001673_050 Hb_001221_090 Hb_001221_090 Hb_007818_030--Hb_001221_090 Hb_000176_100 Hb_000176_100 Hb_007818_030--Hb_000176_100 Hb_013405_160 Hb_013405_160 Hb_002687_090--Hb_013405_160 Hb_002687_090--Hb_000703_130 Hb_002687_090--Hb_007818_030 Hb_000086_050 Hb_000086_050 Hb_002687_090--Hb_000086_050 Hb_000579_010 Hb_000579_010 Hb_002687_090--Hb_000579_010 Hb_007283_030 Hb_007283_030 Hb_002687_090--Hb_007283_030 Hb_000703_200 Hb_000703_200 Hb_004032_040--Hb_000703_200 Hb_004032_040--Hb_012368_100 Hb_000094_320 Hb_000094_320 Hb_004032_040--Hb_000094_320 Hb_004032_040--Hb_000117_070 Hb_000574_420 Hb_000574_420 Hb_004032_040--Hb_000574_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.06316 12.7632 4.6044 2.5036 6.89764 4.76088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32138 1.43934 2.59672 7.1143 6.05939

CAGE analysis