Hb_120496_010

Information

Type -
Description -
Location Contig120496: 1270-1599
Sequence    

Annotation

kegg
ID cam:101503032
description uncharacterized LOC101503032
nr
ID XP_004512449.1
description PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
swissprot
ID Q9FVQ5
description CSC1-like protein At1g32090 OS=Arabidopsis thaliana GN=At1g32090 PE=1 SV=1
trembl
ID M5WE27
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001580mg PE=4 SV=1
Gene Ontology
ID GO:0000139
description csc1-like protein at1g32090

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06319: 1330-1581
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120496_010 0.0 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
2 Hb_001277_390 0.0559318952 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
3 Hb_000203_110 0.0578205656 - - -
4 Hb_003747_080 0.0649322996 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
5 Hb_118941_010 0.0673174764 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_000224_070 0.0732546413 - - -
7 Hb_007441_320 0.0799062029 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
8 Hb_000628_080 0.0878123305 - - hypothetical protein JCGZ_04283 [Jatropha curcas]
9 Hb_181191_010 0.0900317277 - - kinase, putative [Ricinus communis]
10 Hb_137821_010 0.0967903729 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
11 Hb_001247_050 0.0983590344 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
12 Hb_000381_140 0.0990751332 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
13 Hb_001454_030 0.0993312412 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
14 Hb_000027_020 0.1003400151 - - Nonspecific lipid-transfer protein, putative [Ricinus communis]
15 Hb_103942_020 0.1015591706 - - unknown [Zea mays]
16 Hb_003252_030 0.1061831507 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
17 Hb_000203_120 0.1066437928 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000527_090 0.1074897123 - - serine carboxypeptidase, putative [Ricinus communis]
19 Hb_011689_090 0.1078819595 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
20 Hb_017524_020 0.1079922501 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]

Gene co-expression network

sample Hb_120496_010 Hb_120496_010 Hb_001277_390 Hb_001277_390 Hb_120496_010--Hb_001277_390 Hb_000203_110 Hb_000203_110 Hb_120496_010--Hb_000203_110 Hb_003747_080 Hb_003747_080 Hb_120496_010--Hb_003747_080 Hb_118941_010 Hb_118941_010 Hb_120496_010--Hb_118941_010 Hb_000224_070 Hb_000224_070 Hb_120496_010--Hb_000224_070 Hb_007441_320 Hb_007441_320 Hb_120496_010--Hb_007441_320 Hb_001277_390--Hb_118941_010 Hb_001277_390--Hb_000224_070 Hb_001591_020 Hb_001591_020 Hb_001277_390--Hb_001591_020 Hb_000733_170 Hb_000733_170 Hb_001277_390--Hb_000733_170 Hb_001892_040 Hb_001892_040 Hb_001277_390--Hb_001892_040 Hb_181191_010 Hb_181191_010 Hb_000203_110--Hb_181191_010 Hb_000203_110--Hb_003747_080 Hb_000203_120 Hb_000203_120 Hb_000203_110--Hb_000203_120 Hb_008727_090 Hb_008727_090 Hb_000203_110--Hb_008727_090 Hb_137821_010 Hb_137821_010 Hb_000203_110--Hb_137821_010 Hb_003747_080--Hb_181191_010 Hb_003747_080--Hb_137821_010 Hb_000527_090 Hb_000527_090 Hb_003747_080--Hb_000527_090 Hb_003747_080--Hb_008727_090 Hb_118941_010--Hb_000224_070 Hb_000027_020 Hb_000027_020 Hb_118941_010--Hb_000027_020 Hb_153199_010 Hb_153199_010 Hb_118941_010--Hb_153199_010 Hb_007432_040 Hb_007432_040 Hb_118941_010--Hb_007432_040 Hb_004032_170 Hb_004032_170 Hb_118941_010--Hb_004032_170 Hb_000645_040 Hb_000645_040 Hb_000224_070--Hb_000645_040 Hb_000325_090 Hb_000325_090 Hb_000224_070--Hb_000325_090 Hb_000224_070--Hb_001892_040 Hb_103942_020 Hb_103942_020 Hb_007441_320--Hb_103942_020 Hb_001454_030 Hb_001454_030 Hb_007441_320--Hb_001454_030 Hb_003607_040 Hb_003607_040 Hb_007441_320--Hb_003607_040 Hb_007441_320--Hb_000527_090 Hb_006452_080 Hb_006452_080 Hb_007441_320--Hb_006452_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113432 0.101412 3.90614 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis