Hb_120662_010

Information

Type -
Description -
Location Contig120662: 16918-17445
Sequence    

Annotation

kegg
ID pop:POPTR_0006s18790g
description hypothetical protein
nr
ID XP_006381847.1
description hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
swissprot
ID Q9FHH5
description Protein GLUTAMINE DUMPER 3 OS=Arabidopsis thaliana GN=GDU3 PE=2 SV=1
trembl
ID U5GBM9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s18790g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120662_010 0.0 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
2 Hb_001935_190 0.1454599296 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
3 Hb_003043_060 0.1659856231 - - -
4 Hb_030627_040 0.1862206086 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
5 Hb_050686_010 0.1879452305 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000329_420 0.191798831 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
7 Hb_001901_080 0.2006037234 - - PREDICTED: xylose isomerase [Jatropha curcas]
8 Hb_000001_160 0.2012412555 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
9 Hb_000040_050 0.2027736793 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
10 Hb_004324_240 0.2030103865 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
11 Hb_009693_030 0.2042964297 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_003492_010 0.2057114842 - - DREPP plasma membrane polypeptide family protein [Populus trichocarpa]
13 Hb_009119_030 0.2080368017 - - GMFP4 [Medicago truncatula]
14 Hb_001916_120 0.2093909203 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
15 Hb_000886_060 0.2150537692 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
16 Hb_002326_060 0.2179183487 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
17 Hb_007044_010 0.2179268732 - - -
18 Hb_000215_260 0.2184187969 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
19 Hb_003243_020 0.2191352317 - - PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
20 Hb_008406_130 0.2192453354 - - -

Gene co-expression network

sample Hb_120662_010 Hb_120662_010 Hb_001935_190 Hb_001935_190 Hb_120662_010--Hb_001935_190 Hb_003043_060 Hb_003043_060 Hb_120662_010--Hb_003043_060 Hb_030627_040 Hb_030627_040 Hb_120662_010--Hb_030627_040 Hb_050686_010 Hb_050686_010 Hb_120662_010--Hb_050686_010 Hb_000329_420 Hb_000329_420 Hb_120662_010--Hb_000329_420 Hb_001901_080 Hb_001901_080 Hb_120662_010--Hb_001901_080 Hb_001916_120 Hb_001916_120 Hb_001935_190--Hb_001916_120 Hb_001916_060 Hb_001916_060 Hb_001935_190--Hb_001916_060 Hb_001935_190--Hb_000329_420 Hb_000792_110 Hb_000792_110 Hb_001935_190--Hb_000792_110 Hb_000252_090 Hb_000252_090 Hb_001935_190--Hb_000252_090 Hb_000001_160 Hb_000001_160 Hb_003043_060--Hb_000001_160 Hb_003043_060--Hb_001901_080 Hb_000613_100 Hb_000613_100 Hb_003043_060--Hb_000613_100 Hb_027420_050 Hb_027420_050 Hb_003043_060--Hb_027420_050 Hb_003243_020 Hb_003243_020 Hb_003043_060--Hb_003243_020 Hb_001390_010 Hb_001390_010 Hb_030627_040--Hb_001390_010 Hb_000040_050 Hb_000040_050 Hb_030627_040--Hb_000040_050 Hb_006882_010 Hb_006882_010 Hb_030627_040--Hb_006882_010 Hb_002159_030 Hb_002159_030 Hb_030627_040--Hb_002159_030 Hb_005460_030 Hb_005460_030 Hb_030627_040--Hb_005460_030 Hb_003436_050 Hb_003436_050 Hb_030627_040--Hb_003436_050 Hb_114984_010 Hb_114984_010 Hb_050686_010--Hb_114984_010 Hb_006483_010 Hb_006483_010 Hb_050686_010--Hb_006483_010 Hb_000366_190 Hb_000366_190 Hb_050686_010--Hb_000366_190 Hb_050686_010--Hb_000040_050 Hb_050686_010--Hb_000329_420 Hb_000215_260 Hb_000215_260 Hb_000329_420--Hb_000215_260 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000329_420--Hb_000252_090 Hb_000056_230 Hb_000056_230 Hb_000329_420--Hb_000056_230 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030 Hb_031069_020 Hb_031069_020 Hb_001901_080--Hb_031069_020 Hb_078477_040 Hb_078477_040 Hb_001901_080--Hb_078477_040 Hb_001731_020 Hb_001731_020 Hb_001901_080--Hb_001731_020 Hb_001489_070 Hb_001489_070 Hb_001901_080--Hb_001489_070 Hb_001901_080--Hb_006882_010 Hb_006002_030 Hb_006002_030 Hb_001901_080--Hb_006002_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.9132 35.8233 7.27757 51.6037 125.685 85.8251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.89924 4.73159 2.97612 3.47592 9.86144

CAGE analysis