Hb_120820_010

Information

Type -
Description -
Location Contig120820: 84-1172
Sequence    

Annotation

kegg
ID sly:104647505
description uncharacterized LOC104647505
nr
ID XP_012466484.1
description PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID M1E0L9
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400047000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120820_010 0.0 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
2 Hb_019181_020 0.0582613111 - - PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]
3 Hb_005601_030 0.2391655566 - - organic anion transporter, putative [Ricinus communis]
4 Hb_183671_010 0.2411670527 - - serine carboxypeptidase, putative [Ricinus communis]
5 Hb_115832_010 0.2610757703 - - transcription factor, putative [Ricinus communis]
6 Hb_010174_050 0.2643597539 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
7 Hb_000362_140 0.2812287243 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
8 Hb_001301_140 0.2824409331 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
9 Hb_001488_080 0.2877115291 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
10 Hb_000723_070 0.3007719395 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_007413_020 0.3038629041 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007120_020 0.3097571216 - - conserved hypothetical protein [Ricinus communis]
13 Hb_135811_030 0.314729517 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_069877_010 0.3151817732 - - chaperone protein DNAj, putative [Ricinus communis]
15 Hb_001762_050 0.3163603136 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]
16 Hb_086922_010 0.31691842 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
17 Hb_000429_060 0.3174077416 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003861_030 0.3196407771 - - hypothetical protein JCGZ_16321 [Jatropha curcas]
19 Hb_007632_150 0.3197970346 - - conserved hypothetical protein [Ricinus communis]
20 Hb_113444_010 0.3206094082 - - -

Gene co-expression network

sample Hb_120820_010 Hb_120820_010 Hb_019181_020 Hb_019181_020 Hb_120820_010--Hb_019181_020 Hb_005601_030 Hb_005601_030 Hb_120820_010--Hb_005601_030 Hb_183671_010 Hb_183671_010 Hb_120820_010--Hb_183671_010 Hb_115832_010 Hb_115832_010 Hb_120820_010--Hb_115832_010 Hb_010174_050 Hb_010174_050 Hb_120820_010--Hb_010174_050 Hb_000362_140 Hb_000362_140 Hb_120820_010--Hb_000362_140 Hb_019181_020--Hb_183671_010 Hb_019181_020--Hb_005601_030 Hb_019181_020--Hb_115832_010 Hb_019181_020--Hb_010174_050 Hb_001301_140 Hb_001301_140 Hb_019181_020--Hb_001301_140 Hb_005601_030--Hb_183671_010 Hb_005601_030--Hb_115832_010 Hb_001391_050 Hb_001391_050 Hb_005601_030--Hb_001391_050 Hb_047560_010 Hb_047560_010 Hb_005601_030--Hb_047560_010 Hb_000105_110 Hb_000105_110 Hb_005601_030--Hb_000105_110 Hb_183671_010--Hb_115832_010 Hb_006663_110 Hb_006663_110 Hb_183671_010--Hb_006663_110 Hb_183671_010--Hb_001391_050 Hb_115832_010--Hb_006663_110 Hb_000345_180 Hb_000345_180 Hb_115832_010--Hb_000345_180 Hb_115832_010--Hb_001391_050 Hb_007617_040 Hb_007617_040 Hb_115832_010--Hb_007617_040 Hb_001007_080 Hb_001007_080 Hb_010174_050--Hb_001007_080 Hb_043295_010 Hb_043295_010 Hb_010174_050--Hb_043295_010 Hb_007245_010 Hb_007245_010 Hb_010174_050--Hb_007245_010 Hb_000964_160 Hb_000964_160 Hb_010174_050--Hb_000964_160 Hb_007413_020 Hb_007413_020 Hb_000362_140--Hb_007413_020 Hb_173638_010 Hb_173638_010 Hb_000362_140--Hb_173638_010 Hb_007120_020 Hb_007120_020 Hb_000362_140--Hb_007120_020 Hb_000763_030 Hb_000763_030 Hb_000362_140--Hb_000763_030 Hb_001123_180 Hb_001123_180 Hb_000362_140--Hb_001123_180 Hb_137288_010 Hb_137288_010 Hb_000362_140--Hb_137288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0283374 0 0.051898 0.0179689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis