Hb_120823_010

Information

Type -
Description -
Location Contig120823: 9873-12087
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_120823_010 0.0 - - -
2 Hb_000300_390 0.0760012955 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
3 Hb_006588_080 0.0766933807 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
4 Hb_000389_080 0.0831082175 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
5 Hb_002316_120 0.0832865632 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
6 Hb_012539_020 0.0844762161 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
7 Hb_000062_390 0.0873769502 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
8 Hb_001780_050 0.0894973042 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
9 Hb_001155_040 0.0910312105 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
10 Hb_000789_110 0.091673276 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
11 Hb_000878_020 0.0936960115 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
12 Hb_005663_120 0.0946233367 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
13 Hb_011377_020 0.0953962057 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
14 Hb_000260_200 0.0956558748 - - -
15 Hb_005000_180 0.0959035372 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
16 Hb_002391_220 0.0961668653 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
17 Hb_032969_030 0.0965224023 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_000915_120 0.096523202 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
19 Hb_007304_070 0.0973700031 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
20 Hb_152910_020 0.0974821377 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_120823_010 Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_120823_010--Hb_000300_390 Hb_006588_080 Hb_006588_080 Hb_120823_010--Hb_006588_080 Hb_000389_080 Hb_000389_080 Hb_120823_010--Hb_000389_080 Hb_002316_120 Hb_002316_120 Hb_120823_010--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390 Hb_000300_390--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000300_390--Hb_000789_110 Hb_005663_120 Hb_005663_120 Hb_000300_390--Hb_005663_120 Hb_000300_390--Hb_012539_020 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_006588_080--Hb_002316_120 Hb_000172_420 Hb_000172_420 Hb_006588_080--Hb_000172_420 Hb_000389_080--Hb_012539_020 Hb_001780_050 Hb_001780_050 Hb_000389_080--Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_000389_080--Hb_000163_130 Hb_000905_180 Hb_000905_180 Hb_000389_080--Hb_000905_180 Hb_001155_040 Hb_001155_040 Hb_000389_080--Hb_001155_040 Hb_003053_030 Hb_003053_030 Hb_000389_080--Hb_003053_030 Hb_002316_120--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_002316_120--Hb_000270_720 Hb_001377_380 Hb_001377_380 Hb_002316_120--Hb_001377_380 Hb_002316_120--Hb_012539_020 Hb_004007_180 Hb_004007_180 Hb_002316_120--Hb_004007_180 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_012539_020--Hb_001780_050 Hb_012539_020--Hb_005663_120 Hb_001634_040 Hb_001634_040 Hb_000062_390--Hb_001634_040 Hb_002588_010 Hb_002588_010 Hb_000062_390--Hb_002588_010 Hb_019516_100 Hb_019516_100 Hb_000062_390--Hb_019516_100 Hb_000062_390--Hb_001155_040 Hb_000093_110 Hb_000093_110 Hb_000062_390--Hb_000093_110 Hb_007304_070 Hb_007304_070 Hb_000062_390--Hb_007304_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.67883 4.29367 5.46034 11.1938 3.87562 6.85202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0353 51.39 20.0328 8.74889 7.04415

CAGE analysis