Hb_121304_020

Information

Type -
Description -
Location Contig121304: 2575-3961
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06532: 3596-3859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121304_020 0.0 - - -
2 Hb_000624_020 0.2228018075 transcription factor TF Family: NAC NAC transcription factor 004 [Jatropha curcas]
3 Hb_001148_020 0.2516623342 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_000663_030 0.2649168121 - - -
5 Hb_000347_090 0.2676209286 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
6 Hb_011903_010 0.2813783276 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_068347_010 0.2978654266 - - -
8 Hb_002400_370 0.3003841487 - - PREDICTED: uncharacterized protein LOC105637607 [Jatropha curcas]
9 Hb_014919_020 0.3094066601 - - -
10 Hb_005504_020 0.3096394917 - - -
11 Hb_010531_050 0.3104784175 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
12 Hb_009189_040 0.3166155964 - - PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis]
13 Hb_019592_010 0.3257487548 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
14 Hb_184705_010 0.3275419411 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
15 Hb_001999_190 0.3279202596 - - GDP-mannose transporter, putative [Ricinus communis]
16 Hb_007157_060 0.3323501859 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_000438_150 0.3343717334 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
18 Hb_133748_010 0.3358275542 - - -
19 Hb_004242_070 0.3361436427 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
20 Hb_001195_080 0.3366160347 - - PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]

Gene co-expression network

sample Hb_121304_020 Hb_121304_020 Hb_000624_020 Hb_000624_020 Hb_121304_020--Hb_000624_020 Hb_001148_020 Hb_001148_020 Hb_121304_020--Hb_001148_020 Hb_000663_030 Hb_000663_030 Hb_121304_020--Hb_000663_030 Hb_000347_090 Hb_000347_090 Hb_121304_020--Hb_000347_090 Hb_011903_010 Hb_011903_010 Hb_121304_020--Hb_011903_010 Hb_068347_010 Hb_068347_010 Hb_121304_020--Hb_068347_010 Hb_000624_020--Hb_000663_030 Hb_002400_370 Hb_002400_370 Hb_000624_020--Hb_002400_370 Hb_001195_080 Hb_001195_080 Hb_000624_020--Hb_001195_080 Hb_004968_010 Hb_004968_010 Hb_000624_020--Hb_004968_010 Hb_010423_010 Hb_010423_010 Hb_000624_020--Hb_010423_010 Hb_184705_010 Hb_184705_010 Hb_001148_020--Hb_184705_010 Hb_000017_150 Hb_000017_150 Hb_001148_020--Hb_000017_150 Hb_001999_190 Hb_001999_190 Hb_001148_020--Hb_001999_190 Hb_060237_020 Hb_060237_020 Hb_001148_020--Hb_060237_020 Hb_008864_040 Hb_008864_040 Hb_001148_020--Hb_008864_040 Hb_000663_030--Hb_000347_090 Hb_000663_030--Hb_011903_010 Hb_122259_010 Hb_122259_010 Hb_000663_030--Hb_122259_010 Hb_144547_010 Hb_144547_010 Hb_000663_030--Hb_144547_010 Hb_000347_090--Hb_011903_010 Hb_188411_010 Hb_188411_010 Hb_000347_090--Hb_188411_010 Hb_000347_090--Hb_068347_010 Hb_161023_010 Hb_161023_010 Hb_000347_090--Hb_161023_010 Hb_011903_010--Hb_188411_010 Hb_011903_010--Hb_068347_010 Hb_006502_100 Hb_006502_100 Hb_011903_010--Hb_006502_100 Hb_011903_010--Hb_161023_010 Hb_002843_090 Hb_002843_090 Hb_068347_010--Hb_002843_090 Hb_007805_020 Hb_007805_020 Hb_068347_010--Hb_007805_020 Hb_020549_010 Hb_020549_010 Hb_068347_010--Hb_020549_010 Hb_000982_150 Hb_000982_150 Hb_068347_010--Hb_000982_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175764 0.0808413 0.0181581 0.0973477 0.045389 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0351809 0

CAGE analysis