Hb_121441_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig121441: 546-3242
Sequence    

Annotation

kegg
ID rcu:RCOM_0751360
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067JQ82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121441_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_059780_010 0.0882505471 - - PREDICTED: uncharacterized protein LOC104885482, partial [Beta vulgaris subsp. vulgaris]
3 Hb_000149_090 0.1100066014 - - -
4 Hb_000982_120 0.1162409508 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
5 Hb_000675_040 0.1235470291 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
6 Hb_145211_010 0.1289145458 - - hypothetical protein M569_05648, partial [Genlisea aurea]
7 Hb_002566_010 0.1327611536 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
8 Hb_009510_060 0.138226242 - - -
9 Hb_000644_040 0.1398738244 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_009157 [Vitis vinifera]
10 Hb_064482_010 0.1527151308 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_010926_030 0.1539975006 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
12 Hb_031931_030 0.1559560571 - - lipid binding protein, putative [Ricinus communis]
13 Hb_010761_030 0.1707197759 - - cytochrome P450, putative [Ricinus communis]
14 Hb_002122_050 0.1743649873 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_008692_020 0.175413507 - - -
16 Hb_054865_030 0.1758908285 - - -
17 Hb_002490_090 0.1785787121 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
18 Hb_127507_010 0.1808646664 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
19 Hb_002555_030 0.1809338537 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Malus domestica]
20 Hb_001607_070 0.1820855455 - - hypothetical protein JCGZ_09913 [Jatropha curcas]

Gene co-expression network

sample Hb_121441_010 Hb_121441_010 Hb_059780_010 Hb_059780_010 Hb_121441_010--Hb_059780_010 Hb_000149_090 Hb_000149_090 Hb_121441_010--Hb_000149_090 Hb_000982_120 Hb_000982_120 Hb_121441_010--Hb_000982_120 Hb_000675_040 Hb_000675_040 Hb_121441_010--Hb_000675_040 Hb_145211_010 Hb_145211_010 Hb_121441_010--Hb_145211_010 Hb_002566_010 Hb_002566_010 Hb_121441_010--Hb_002566_010 Hb_059780_010--Hb_145211_010 Hb_059780_010--Hb_000675_040 Hb_059780_010--Hb_002566_010 Hb_059780_010--Hb_000982_120 Hb_031931_030 Hb_031931_030 Hb_059780_010--Hb_031931_030 Hb_009510_060 Hb_009510_060 Hb_000149_090--Hb_009510_060 Hb_010926_030 Hb_010926_030 Hb_000149_090--Hb_010926_030 Hb_000644_040 Hb_000644_040 Hb_000149_090--Hb_000644_040 Hb_000149_090--Hb_002566_010 Hb_008692_020 Hb_008692_020 Hb_000149_090--Hb_008692_020 Hb_000982_120--Hb_002566_010 Hb_000982_120--Hb_031931_030 Hb_002900_040 Hb_002900_040 Hb_000982_120--Hb_002900_040 Hb_000982_120--Hb_145211_010 Hb_000675_040--Hb_145211_010 Hb_131320_010 Hb_131320_010 Hb_000675_040--Hb_131320_010 Hb_002122_050 Hb_002122_050 Hb_000675_040--Hb_002122_050 Hb_007676_060 Hb_007676_060 Hb_000675_040--Hb_007676_060 Hb_145211_010--Hb_002566_010 Hb_000946_030 Hb_000946_030 Hb_145211_010--Hb_000946_030 Hb_145211_010--Hb_002122_050 Hb_002566_010--Hb_031931_030 Hb_010761_030 Hb_010761_030 Hb_002566_010--Hb_010761_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.043624 0 0.0544637 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.141736 0.0802199

CAGE analysis