Hb_121550_010

Information

Type -
Description -
Location Contig121550: 351-940
Sequence    

Annotation

kegg
ID rcu:RCOM_0610240
description hypothetical protein
nr
ID XP_002522010.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9XIP5
description Putative B3 domain-containing protein At2g27410 OS=Arabidopsis thaliana GN=At2g27410 PE=3 SV=2
trembl
ID B9S7P1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0610240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121550_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000025_100 0.1823342916 - - -
3 Hb_000832_240 0.1885793209 - - conserved hypothetical protein [Ricinus communis]
4 Hb_147123_010 0.1891410648 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
5 Hb_008442_010 0.1947535315 - - PREDICTED: nudix hydrolase 16, mitochondrial-like [Citrus sinensis]
6 Hb_000122_030 0.2193979898 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
7 Hb_115919_010 0.2222649715 - - unknown [Lotus japonicus]
8 Hb_000048_100 0.2248097887 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004502_050 0.2268855534 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
10 Hb_000265_130 0.2311875914 - - -
11 Hb_000048_090 0.2320816998 transcription factor TF Family: SET hypothetical protein JCGZ_06559 [Jatropha curcas]
12 Hb_001310_070 0.2333300987 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
13 Hb_008221_110 0.2336849449 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
14 Hb_000001_040 0.2349697663 - - unnamed protein product [Coffea canephora]
15 Hb_168737_010 0.2413043505 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_027472_030 0.2428632261 - - RNA helicase 36, partial [Manihot esculenta]
17 Hb_000320_320 0.2464240408 - - hypothetical protein POPTR_0004s01360g [Populus trichocarpa]
18 Hb_003023_040 0.2492740891 - - -
19 Hb_061581_010 0.2493069221 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
20 Hb_008277_030 0.2498398642 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_121550_010 Hb_121550_010 Hb_000025_100 Hb_000025_100 Hb_121550_010--Hb_000025_100 Hb_000832_240 Hb_000832_240 Hb_121550_010--Hb_000832_240 Hb_147123_010 Hb_147123_010 Hb_121550_010--Hb_147123_010 Hb_008442_010 Hb_008442_010 Hb_121550_010--Hb_008442_010 Hb_000122_030 Hb_000122_030 Hb_121550_010--Hb_000122_030 Hb_115919_010 Hb_115919_010 Hb_121550_010--Hb_115919_010 Hb_126112_010 Hb_126112_010 Hb_000025_100--Hb_126112_010 Hb_000025_100--Hb_008442_010 Hb_000025_100--Hb_147123_010 Hb_021888_110 Hb_021888_110 Hb_000025_100--Hb_021888_110 Hb_071923_010 Hb_071923_010 Hb_000025_100--Hb_071923_010 Hb_168737_010 Hb_168737_010 Hb_000832_240--Hb_168737_010 Hb_000832_240--Hb_000122_030 Hb_001057_050 Hb_001057_050 Hb_000832_240--Hb_001057_050 Hb_000001_040 Hb_000001_040 Hb_000832_240--Hb_000001_040 Hb_005305_060 Hb_005305_060 Hb_000832_240--Hb_005305_060 Hb_147123_010--Hb_008442_010 Hb_007545_050 Hb_007545_050 Hb_147123_010--Hb_007545_050 Hb_000048_090 Hb_000048_090 Hb_147123_010--Hb_000048_090 Hb_000265_130 Hb_000265_130 Hb_147123_010--Hb_000265_130 Hb_013492_010 Hb_013492_010 Hb_008442_010--Hb_013492_010 Hb_001405_130 Hb_001405_130 Hb_008442_010--Hb_001405_130 Hb_029888_020 Hb_029888_020 Hb_008442_010--Hb_029888_020 Hb_001310_070 Hb_001310_070 Hb_000122_030--Hb_001310_070 Hb_000122_030--Hb_001057_050 Hb_000122_030--Hb_115919_010 Hb_000003_350 Hb_000003_350 Hb_000122_030--Hb_000003_350 Hb_004117_180 Hb_004117_180 Hb_000122_030--Hb_004117_180 Hb_000122_030--Hb_005305_060 Hb_121236_010 Hb_121236_010 Hb_115919_010--Hb_121236_010 Hb_027445_060 Hb_027445_060 Hb_115919_010--Hb_027445_060 Hb_001095_060 Hb_001095_060 Hb_115919_010--Hb_001095_060 Hb_061581_010 Hb_061581_010 Hb_115919_010--Hb_061581_010 Hb_115919_010--Hb_005305_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.227794 0 0 0.216071 0.0928384 1.32897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.701687 0.551282 0 0.0802047 0

CAGE analysis