Hb_121729_010

Information

Type -
Description -
Location Contig121729: 425-1667
Sequence    

Annotation

kegg
ID rcu:RCOM_0331400
description DNA binding protein, putative
nr
ID XP_002533547.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T5M8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0331400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121729_010 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_001828_150 0.069104689 - - PREDICTED: cytochrome c1-2, heme protein, mitochondrial [Jatropha curcas]
3 Hb_001472_100 0.076715113 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
4 Hb_009898_050 0.0791596328 - - PREDICTED: beta-taxilin [Jatropha curcas]
5 Hb_000110_310 0.0794187166 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
6 Hb_001189_070 0.081254627 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
7 Hb_008616_050 0.0821042491 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
8 Hb_000381_120 0.0836725923 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]
9 Hb_001366_370 0.0844021747 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
10 Hb_003678_020 0.0849564176 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006153_070 0.0850402629 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
12 Hb_004545_110 0.086660122 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
13 Hb_000676_120 0.0867716925 - - -
14 Hb_024650_070 0.0872450276 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
15 Hb_000768_210 0.0895718483 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
16 Hb_014720_110 0.0912301991 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
17 Hb_000069_720 0.0917793337 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
18 Hb_001318_280 0.0921101703 - - Protein FAM18B, putative [Ricinus communis]
19 Hb_006573_190 0.0941575573 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
20 Hb_001268_240 0.0944136241 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_121729_010 Hb_121729_010 Hb_001828_150 Hb_001828_150 Hb_121729_010--Hb_001828_150 Hb_001472_100 Hb_001472_100 Hb_121729_010--Hb_001472_100 Hb_009898_050 Hb_009898_050 Hb_121729_010--Hb_009898_050 Hb_000110_310 Hb_000110_310 Hb_121729_010--Hb_000110_310 Hb_001189_070 Hb_001189_070 Hb_121729_010--Hb_001189_070 Hb_008616_050 Hb_008616_050 Hb_121729_010--Hb_008616_050 Hb_001218_030 Hb_001218_030 Hb_001828_150--Hb_001218_030 Hb_006573_190 Hb_006573_190 Hb_001828_150--Hb_006573_190 Hb_008841_020 Hb_008841_020 Hb_001828_150--Hb_008841_020 Hb_000853_150 Hb_000853_150 Hb_001828_150--Hb_000853_150 Hb_000381_120 Hb_000381_120 Hb_001828_150--Hb_000381_120 Hb_000976_120 Hb_000976_120 Hb_001472_100--Hb_000976_120 Hb_002553_060 Hb_002553_060 Hb_001472_100--Hb_002553_060 Hb_001472_100--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_001472_100--Hb_107879_010 Hb_000270_680 Hb_000270_680 Hb_001472_100--Hb_000270_680 Hb_003207_180 Hb_003207_180 Hb_001472_100--Hb_003207_180 Hb_006153_070 Hb_006153_070 Hb_009898_050--Hb_006153_070 Hb_009898_050--Hb_000110_310 Hb_009898_050--Hb_008616_050 Hb_000915_260 Hb_000915_260 Hb_009898_050--Hb_000915_260 Hb_000640_170 Hb_000640_170 Hb_009898_050--Hb_000640_170 Hb_000579_120 Hb_000579_120 Hb_009898_050--Hb_000579_120 Hb_000110_310--Hb_006153_070 Hb_000110_310--Hb_000579_120 Hb_000110_310--Hb_000270_680 Hb_001268_240 Hb_001268_240 Hb_000110_310--Hb_001268_240 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_000347_240 Hb_000347_240 Hb_001189_070--Hb_000347_240 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050 Hb_001232_190 Hb_001232_190 Hb_008616_050--Hb_001232_190 Hb_002641_060 Hb_002641_060 Hb_008616_050--Hb_002641_060 Hb_004545_110 Hb_004545_110 Hb_008616_050--Hb_004545_110 Hb_001318_280 Hb_001318_280 Hb_008616_050--Hb_001318_280 Hb_008847_030 Hb_008847_030 Hb_008616_050--Hb_008847_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01664 0.435636 1.95413 1.76557 1.10047 1.40392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.84107 1.89701 1.17877 1.97715 1.61056

CAGE analysis