Hb_121881_010

Information

Type -
Description -
Location Contig121881: 24873-27078
Sequence    

Annotation

kegg
ID pop:POPTR_0015s15770g
description POPTRDRAFT_776475; hypothetical protein
nr
ID XP_002321799.2
description hypothetical protein POPTR_0015s15770g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9ICJ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s15770g PE=4 SV=2
Gene Ontology
ID GO:0016757
description gdp-fucose protein o-fucosyltransferase 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06640: 25574-26057 , PASA_asmbl_06641: 26119-27013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121881_010 0.0 - - hypothetical protein POPTR_0015s15770g [Populus trichocarpa]
2 Hb_001633_200 0.1048111346 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
3 Hb_000742_020 0.1252219404 - - ARF GTPase activator, putative [Ricinus communis]
4 Hb_000057_110 0.1266750658 - - PREDICTED: kinesin-13A [Jatropha curcas]
5 Hb_006829_060 0.131687427 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
6 Hb_000684_030 0.1318416634 - - syntaxin, putative [Ricinus communis]
7 Hb_000200_300 0.1321890537 - - PREDICTED: uncharacterized protein LOC105636926 [Jatropha curcas]
8 Hb_001507_120 0.134138896 - - transcription factor, putative [Ricinus communis]
9 Hb_156850_100 0.1341518077 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
10 Hb_171215_010 0.1371608556 - - vesicle-associated membrane protein, putative [Ricinus communis]
11 Hb_001606_060 0.137839225 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000244_180 0.1394854107 - - conserved hypothetical protein [Ricinus communis]
13 Hb_012573_050 0.1397961526 - - choline/ethanolamine kinase family protein [Populus trichocarpa]
14 Hb_004088_040 0.1438556524 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
15 Hb_000072_300 0.1440991987 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
16 Hb_004003_030 0.1441228308 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002174_040 0.1451873138 - - DNAJ heat shock family protein [Theobroma cacao]
18 Hb_004032_320 0.1451946487 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
19 Hb_000181_350 0.1460448551 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
20 Hb_000765_060 0.1464238233 - - Alcohol dehydrogenase-like 6 [Glycine soja]

Gene co-expression network

sample Hb_121881_010 Hb_121881_010 Hb_001633_200 Hb_001633_200 Hb_121881_010--Hb_001633_200 Hb_000742_020 Hb_000742_020 Hb_121881_010--Hb_000742_020 Hb_000057_110 Hb_000057_110 Hb_121881_010--Hb_000057_110 Hb_006829_060 Hb_006829_060 Hb_121881_010--Hb_006829_060 Hb_000684_030 Hb_000684_030 Hb_121881_010--Hb_000684_030 Hb_000200_300 Hb_000200_300 Hb_121881_010--Hb_000200_300 Hb_001507_120 Hb_001507_120 Hb_001633_200--Hb_001507_120 Hb_000705_230 Hb_000705_230 Hb_001633_200--Hb_000705_230 Hb_000395_280 Hb_000395_280 Hb_001633_200--Hb_000395_280 Hb_000197_020 Hb_000197_020 Hb_001633_200--Hb_000197_020 Hb_010672_020 Hb_010672_020 Hb_001633_200--Hb_010672_020 Hb_003777_200 Hb_003777_200 Hb_001633_200--Hb_003777_200 Hb_013394_050 Hb_013394_050 Hb_000742_020--Hb_013394_050 Hb_001609_040 Hb_001609_040 Hb_000742_020--Hb_001609_040 Hb_007441_080 Hb_007441_080 Hb_000742_020--Hb_007441_080 Hb_005993_010 Hb_005993_010 Hb_000742_020--Hb_005993_010 Hb_000069_640 Hb_000069_640 Hb_000742_020--Hb_000069_640 Hb_000244_170 Hb_000244_170 Hb_000742_020--Hb_000244_170 Hb_000057_110--Hb_000684_030 Hb_000057_110--Hb_000200_300 Hb_000364_170 Hb_000364_170 Hb_000057_110--Hb_000364_170 Hb_000012_080 Hb_000012_080 Hb_000057_110--Hb_000012_080 Hb_000057_110--Hb_006829_060 Hb_008725_270 Hb_008725_270 Hb_000057_110--Hb_008725_270 Hb_006829_060--Hb_000012_080 Hb_000979_130 Hb_000979_130 Hb_006829_060--Hb_000979_130 Hb_001976_030 Hb_001976_030 Hb_006829_060--Hb_001976_030 Hb_002687_160 Hb_002687_160 Hb_006829_060--Hb_002687_160 Hb_019654_020 Hb_019654_020 Hb_006829_060--Hb_019654_020 Hb_001221_030 Hb_001221_030 Hb_000684_030--Hb_001221_030 Hb_000174_260 Hb_000174_260 Hb_000684_030--Hb_000174_260 Hb_003266_030 Hb_003266_030 Hb_000684_030--Hb_003266_030 Hb_000684_030--Hb_000200_300 Hb_003605_020 Hb_003605_020 Hb_000684_030--Hb_003605_020 Hb_000926_080 Hb_000926_080 Hb_000200_300--Hb_000926_080 Hb_000200_300--Hb_003266_030 Hb_004965_110 Hb_004965_110 Hb_000200_300--Hb_004965_110 Hb_000086_080 Hb_000086_080 Hb_000200_300--Hb_000086_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64521 0.521721 3.86033 3.62174 0.371883 1.11216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.911941 1.13802 2.27702 1.16535 2.84588

CAGE analysis